Parental gene:

RPL27A, ENSVPAG00000011227

Aliases:None
Description:ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_2535:27713..30818(+)


>ENSVPAG00000011227
ATGCCATCCAGACTAAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATCGGCAAACACCGGAA
GCATCCGGGAGGCCGGGGTAATGCTGGTGGCATGCATCACCACAGGATCAACTTCGACAAATATCACCCAGGATACTTTG
GGAAAGTTGGTATGAGGCATTACCACTTAAAGAGGAACCAAAGCTTCTGCCCAACTGTCAACCTTGATAAATTATGGACC
TTGGTCAGTGAGCAGACACGGGTAAATGCTGCCAAGAACAAGACTGGAGCTGCTCCTATCATTGATGTGGTGCGATCGGG
CTACTACAAAGTTCTGGGGAAGGGAAAGCTTCCTAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTG
AGGAGAAGATTAAGGGTGTGGGTGGTGCCTGTGTCCTGGTAGCTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 possible_ortholog 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 possible_ortholog 1 retrogene
retro_cjac_211,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Oryctolagus cuniculus ENSOCUG00000005442 possible_ortholog 1 retrogene
retro_ocun_12,
Ochotona princeps ENSOPRG00000004717 ortholog_one2one 11 retrogenes
retro_opri_1080, retro_opri_1214, retro_opri_131, retro_opri_203, retro_opri_255, retro_opri_304, retro_opri_570, retro_opri_769, retro_opri_798, retro_opri_836, retro_opri_990,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_99 82.43 100.00
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2. retro_vpac_200 65.79 51.35
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3. retro_vpac_272 62.30 80.41
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4. retro_vpac_286 78.67 100.00
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5. retro_vpac_426 93.29 100.00
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6. retro_vpac_508 82.67 100.00
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7. retro_vpac_581 93.22 79.05
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Download FASTA sequences of all ENSVPAG00000011227 retrocopies