Parental gene:

Rpl27a, ENSRNOG00000014214

Aliases:None
Description:60S ribosomal protein L27a [Source:UniProtKB/Swiss-Prot;Acc:P18445]
Organism:Rat (Rattus norvegicus)
Coordinates:1:181121467..181124486(+)


>ENSRNOG00000014214
ATGCCATCCAGACTGAGGAAGACCCGGAAACTCCGGGGCCACGTGAGCCACGGCCACGGTCGCATCGGTAAGCACCGCAA
GCACCCAGGAGGCCGCGGGAATGCTGGAGGCATGCATCACCACAGGATCAACTTTGACAAATATCATCCAGGTTACTTCG
GCAAAGTTGGCATGAGGCATTACCACTTGAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTGGATAAATTATGGACG
TTGGTCAGCGAGCAGACACGGGTCAATGCAGCAAAAAACAAGAATGGAGTTGCTCCCATCATTGACGTTGTTCGATCAGG
CTACTACAAAGTTCTGGGGAAGGGGAAGCTCCCTAAGCAACCTGTCATCGTGAAGGCCAAGTTCTTCAGCAGAAGAGCTG
AAGAGAAGATAAAGGGTGTGGGAGGTGCCTGTGTCCTGGTGGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 68 .45 RPM
SRP017611_kidney 93 .23 RPM
SRP017611_liver 54 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 possible_ortholog 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 possible_ortholog 1 retrogene
retro_cjac_211,
Equus caballus ENSECAG00000022469 possible_ortholog 1 retrogene
retro_ecab_289,
Ficedula albicollis ENSFALG00000000924 possible_ortholog 1 retrogene
retro_falb_20,
Felis catus ENSFCAG00000008411 possible_ortholog 13 retrogenes
retro_fcat_1162, retro_fcat_1285, retro_fcat_1305, retro_fcat_1380, retro_fcat_1635, retro_fcat_1761, retro_fcat_1805, retro_fcat_1974, retro_fcat_469, retro_fcat_652, retro_fcat_673, retro_fcat_817, retro_fcat_907,
Homo sapiens ENSG00000166441 possible_ortholog 7 retrogenes
retro_hsap_1263, retro_hsap_1908, retro_hsap_2352, retro_hsap_239, retro_hsap_3335, retro_hsap_3586, retro_hsap_3682,
Gorilla gorilla ENSGGOG00000001660 possible_ortholog 2 retrogenes
retro_ggor_155, retro_ggor_1785,
Loxodonta africana ENSLAFG00000000425 possible_ortholog 2 retrogenes
retro_lafr_25, retro_lafr_50,
Microcebus murinus ENSMICG00000002296 possible_ortholog 4 retrogenes
retro_mmur_1309, retro_mmur_459, retro_mmur_612, retro_mmur_835,
Myotis lucifugus ENSMLUG00000016616 ortholog_many2many 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Macaca mulatta ENSMMUG00000021828 possible_ortholog 2 retrogenes
retro_mmul_207, retro_mmul_268,
Monodelphis domestica ENSMODG00000007480 possible_ortholog 1 retrogene
retro_mdom_575,
Mustela putorius furo ENSMPUG00000012532 possible_ortholog 3 retrogenes
retro_mputfur_118, retro_mputfur_1362, retro_mputfur_464,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Nomascus leucogenys ENSNLEG00000017535 possible_ortholog 1 retrogene
retro_nleu_102,
Oryctolagus cuniculus ENSOCUG00000005442 possible_ortholog 1 retrogene
retro_ocun_12,
Ochotona princeps ENSOPRG00000004717 possible_ortholog 11 retrogenes
retro_opri_1080, retro_opri_1214, retro_opri_131, retro_opri_203, retro_opri_255, retro_opri_304, retro_opri_570, retro_opri_769, retro_opri_798, retro_opri_836, retro_opri_990,
Pan troglodytes ENSPTRG00000003333 possible_ortholog 1 retrogene
retro_ptro_33,
Pteropus vampyrus ENSPVAG00000002887 possible_ortholog 14 retrogenes
retro_pvam_1087, retro_pvam_1130, retro_pvam_1135, retro_pvam_119, retro_pvam_1305, retro_pvam_198, retro_pvam_392, retro_pvam_54, retro_pvam_546, retro_pvam_575, retro_pvam_837, retro_pvam_84, retro_pvam_93, retro_pvam_993,
Sus scrofa ENSSSCG00000014569 possible_ortholog 9 retrogenes
retro_sscr_527, retro_sscr_574, retro_sscr_587, retro_sscr_588, retro_sscr_644, retro_sscr_668, retro_sscr_677, retro_sscr_769, retro_sscr_809,
Tupaia belangeri ENSTBEG00000000046 ortholog_one2many 20 retrogenes
retro_tbel_1093, retro_tbel_1101, retro_tbel_1148, retro_tbel_1152, retro_tbel_1223, retro_tbel_1338, retro_tbel_1639, retro_tbel_2017, retro_tbel_2606, retro_tbel_2777, retro_tbel_298, retro_tbel_3111, retro_tbel_3496, retro_tbel_3881, retro_tbel_4566, retro_tbel_460, retro_tbel_544, retro_tbel_643, retro_tbel_925, retro_tbel_937,
Taeniopygia guttata ENSTGUG00000008355 possible_ortholog 1 retrogene
retro_tgut_18,
Tarsius syrichta ENSTSYG00000013207 possible_ortholog 16 retrogenes
retro_tsyr_1103, retro_tsyr_155, retro_tsyr_1591, retro_tsyr_1607, retro_tsyr_1623, retro_tsyr_170, retro_tsyr_1725, retro_tsyr_187, retro_tsyr_204, retro_tsyr_283, retro_tsyr_498, retro_tsyr_50, retro_tsyr_550, retro_tsyr_608, retro_tsyr_612, retro_tsyr_716,
Vicugna pacos ENSVPAG00000011227 possible_ortholog 7 retrogenes
retro_vpac_200, retro_vpac_272, retro_vpac_286, retro_vpac_426, retro_vpac_508, retro_vpac_581, retro_vpac_99,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_132 96.53 97.30
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2. retro_rnor_193 75.00 89.19
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3. retro_rnor_253 97.97 100.00
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4. retro_rnor_261 89.63 91.22
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5. retro_rnor_334 93.92 100.00
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6. retro_rnor_370 92.57 100.00
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7. retro_rnor_565 86.21 97.30
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8. retro_rnor_606 77.45 68.92
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9. retro_rnor_1996 83.33 100.00
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10. retro_rnor_2466 78.00 100.00
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Download FASTA sequences of all ENSRNOG00000014214 retrocopies