RetrogeneDB ID: | retro_vpac_286 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3714:895071..895504(-) | ||
Located in intron of: | ENSVPAG00000011755 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27A | ||
Ensembl ID: | ENSVPAG00000011227 | ||
Aliases: | None | ||
Description: | ribosomal protein L27a [Source:HGNC Symbol;Acc:10329] |
Percent Identity: | 78.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPSRLRKTRKLRGHVSHGHGRIGKHRKH-PGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSF |
MP.RLRKT..L.GHVSHGH..IGKHRKH.PG..GNAGGMHHHRIN...YHPGY.GKVGMRHYHLKR.Q.F | |
Retrocopy | MPFRLRKTWEL-GHVSHGH--IGKHRKH<PGCWGNAGGMHHHRININIYHPGYSGKVGMRHYHLKRSQRF |
Parental | CPTVNLDKLWTL-VSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIK |
C.TVNLDKLW.L.VSEQT.VNAAK.KT..A...D.V.SGYYKVLGKG.LP.Q..IVKAKFFSRRAEEKIK | |
Retrocopy | CSTVNLDKLWPL<VSEQTQVNAAKSKTRVASVTDMVQSGYYKVLGKGNLPEQSIIVKAKFFSRRAEEKIK |
Parental | GVGGACVLVA |
GV.GACVLVA | |
Retrocopy | GVDGACVLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004205 | 15 retrocopies | |
Bos taurus | ENSBTAG00000005349 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006936 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011775 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016616 | 7 retrocopies | |
Mus musculus | ENSMUSG00000046364 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005442 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004717 | 11 retrocopies | |
Rattus norvegicus | ENSRNOG00000014214 | 10 retrocopies | |
Vicugna pacos | ENSVPAG00000011227 | 7 retrocopies |
retro_vpac_200, retro_vpac_272, retro_vpac_286 , retro_vpac_426, retro_vpac_508, retro_vpac_581, retro_vpac_99,
|