RetrogeneDB ID: | retro_acar_112 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 3:166021987..166022290(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000013018 | ||
Aliases: | None | ||
Description: | Thioredoxin [Source:UniProtKB/TrEMBL;Acc:H9GJI5] |
Percent Identity: | 89.11 % |
Parental protein coverage: | 96.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FPTQVEFQSELDNAAEKLVVVDFSATWCGPCKMIKPFFHSLSEKYPDVTFIEIDVDDAQDVAAHCDVKCM |
F...VEFQSEL..AAEKLVV.DFSATWCGP.KMIKPFFHSL.EKYPDV.F.EIDVDDAQD.AAHCDVKCM | |
Retrocopy | FGSLVEFQSELADAAEKLVVIDFSATWCGP*KMIKPFFHSLVEKYPDVIFVEIDVDDAQDIAAHCDVKCM |
Parental | PTFQFYKNKEKVHEFSGANKEKLEETIKKLK |
PTFQFYKNKEKVHEFSGANKEKLEETIKKLK | |
Retrocopy | PTFQFYKNKEKVHEFSGANKEKLEETIKKLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .16 RPM | 285 .32 RPM |
SRP009831_brain | 0 .09 RPM | 123 .27 RPM |
SRP009831_dewlap | 0 .21 RPM | 272 .40 RPM |
SRP009831_embryo | 0 .00 RPM | 130 .11 RPM |
SRP009831_heart | 0 .05 RPM | 68 .02 RPM |
SRP009831_liver | 0 .00 RPM | 447 .35 RPM |
SRP009831_lung | 0 .00 RPM | 132 .33 RPM |
SRP009831_ovary | 0 .27 RPM | 305 .31 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 32 .05 RPM |