Parental gene:

TXN, ENSCJAG00000017321

Aliases:LOC100413131, TXN, trx
Description:Thioredoxin [Source:UniProtKB/Swiss-Prot;Acc:Q9BDJ3]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:153729183..153742179(-)


>ENSCJAG00000017321
ATGGTCAAGCAGATCGACAGCAAGGATGCTTTTCAGGAAGCCTTGGATGCGGCAGGTGATAAACTTGTAGTAGTTGACTT
CTCAGCCACGTGGTGTGGGCCTTGCAAAATGATCAAGCCTTTTTTCCATTCCCTCTCTGAAAAGTATTCCAATGTGGTAT
TCCTTGAAGTAGACGTGGATGACTGTCAGGATGTTGCTTCAGAGTGTGAAGTCAAATGCATGCCAACATTCCAGTTTTTT
AAGAAGGGACAAAAGGTGGGTGAATTTTCTGGAGCCAATAAGGAAAAGCTTGAAGCCACCATTAATGAATTCGTCTAA

Library Parental gene expression (RPM)
SRP051959_colon 75 .88 RPM
SRP051959_heart 15 .17 RPM
SRP051959_kidney 38 .87 RPM
SRP051959_liver 43 .93 RPM
SRP051959_lung 29 .35 RPM
SRP051959_lymph_node 22 .08 RPM
SRP051959_skeletal_muscle 7 .82 RPM
SRP051959_spleen 21 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013018 ortholog_one2many 3 retrogenes
retro_acar_112, retro_acar_121, retro_acar_122,
Ailuropoda melanoleuca ENSAMEG00000018017 possible_ortholog 3 retrogenes
retro_amel_1559, retro_amel_211, retro_amel_217,
Bos taurus ENSBTAG00000002953 possible_ortholog 2 retrogenes
retro_btau_1267, retro_btau_418,
Choloepus hoffmanni ENSCHOG00000011506 ortholog_one2many 10 retrogenes
retro_chof_1111, retro_chof_127, retro_chof_1557, retro_chof_1680, retro_chof_1696, retro_chof_240, retro_chof_2424, retro_chof_317, retro_chof_617, retro_chof_82,
Cavia porcellus ENSCPOG00000015348 ortholog_many2many 5 retrogenes
retro_cpor_1048, retro_cpor_49, retro_cpor_54, retro_cpor_55, retro_cpor_74,
Dasypus novemcinctus ENSDNOG00000019205 ortholog_one2many 20 retrogenes
retro_dnov_100, retro_dnov_1047, retro_dnov_1122, retro_dnov_1222, retro_dnov_1353, retro_dnov_1403, retro_dnov_1404, retro_dnov_1628, retro_dnov_1634, retro_dnov_1646, retro_dnov_1949, retro_dnov_1996, retro_dnov_2069, retro_dnov_2197, retro_dnov_2239, retro_dnov_290, retro_dnov_466, retro_dnov_593, retro_dnov_843, retro_dnov_852,
Equus caballus ENSECAG00000013324 possible_ortholog 1 retrogene
retro_ecab_51,
Echinops telfairi ENSETEG00000003065 ortholog_one2many 13 retrogenes
retro_etel_1173, retro_etel_1256, retro_etel_1672, retro_etel_1725, retro_etel_1807, retro_etel_1831, retro_etel_1932, retro_etel_1956, retro_etel_320, retro_etel_389, retro_etel_737, retro_etel_903, retro_etel_926,
Felis catus ENSFCAG00000004790 possible_ortholog 4 retrogenes
retro_fcat_1096, retro_fcat_1105, retro_fcat_2025, retro_fcat_877,
Homo sapiens ENSG00000136810 ortholog_one2many 7 retrogenes
retro_hsap_1713, retro_hsap_206, retro_hsap_2330, retro_hsap_3052, retro_hsap_3614, retro_hsap_405, retro_hsap_736,
Gorilla gorilla ENSGGOG00000006925 ortholog_many2many 6 retrogenes
retro_ggor_1283, retro_ggor_1769, retro_ggor_2440, retro_ggor_35, retro_ggor_401, retro_ggor_620,
Loxodonta africana ENSLAFG00000012856 ortholog_one2many 2 retrogenes
retro_lafr_372, retro_lafr_93,
Macropus eugenii ENSMEUG00000003515 ortholog_one2many 8 retrogenes
retro_meug_1198, retro_meug_1204, retro_meug_1603, retro_meug_192, retro_meug_2170, retro_meug_2175, retro_meug_539, retro_meug_840,
Microcebus murinus ENSMICG00000002128 ortholog_one2many 2 retrogenes
retro_mmur_118, retro_mmur_717,
Myotis lucifugus ENSMLUG00000009065 possible_ortholog 3 retrogenes
retro_mluc_1268, retro_mluc_1940, retro_mluc_776,
Macaca mulatta ENSMMUG00000010322 ortholog_many2many 1 retrogene
retro_mmul_167,
Mustela putorius furo ENSMPUG00000007426 possible_ortholog 3 retrogenes
retro_mputfur_1230, retro_mputfur_693, retro_mputfur_840,
Mus musculus ENSMUSG00000028367 ortholog_one2many 2 retrogenes
retro_mmus_3063, retro_mmus_432,
Otolemur garnettii ENSOGAG00000009165 ortholog_one2many 6 retrogenes
retro_ogar_1573, retro_ogar_2763, retro_ogar_3141, retro_ogar_3205, retro_ogar_727, retro_ogar_851,
Ochotona princeps ENSOPRG00000013805 ortholog_one2many 11 retrogenes
retro_opri_1132, retro_opri_1172, retro_opri_220, retro_opri_309, retro_opri_468, retro_opri_643, retro_opri_681, retro_opri_738, retro_opri_81, retro_opri_887, retro_opri_89,
Procavia capensis ENSPCAG00000014011 ortholog_one2many 1 retrogene
retro_pcap_311,
Pongo abelii ENSPPYG00000019491 ortholog_many2many 2 retrogenes
retro_pabe_1428, retro_pabe_2965,
Pan troglodytes ENSPTRG00000021245 ortholog_one2many 7 retrogenes
retro_ptro_1158, retro_ptro_1703, retro_ptro_1988, retro_ptro_2444, retro_ptro_309, retro_ptro_339, retro_ptro_524,
Pteropus vampyrus ENSPVAG00000007265 possible_ortholog 1 retrogene
retro_pvam_433,
Rattus norvegicus ENSRNOG00000012081 ortholog_one2many 1 retrogene
retro_rnor_616,
Sorex araneus ENSSARG00000007465 possible_ortholog 2 retrogenes
retro_sara_373, retro_sara_525,
Sarcophilus harrisii ENSSHAG00000006739 ortholog_one2many 1 retrogene
retro_shar_329,
Sus scrofa ENSSSCG00000005453 possible_ortholog 1 retrogene
retro_sscr_786,
Ictidomys tridecemlineatus ENSSTOG00000020668 possible_ortholog 4 retrogenes
retro_itri_6, retro_itri_714, retro_itri_823, retro_itri_884,
Tupaia belangeri ENSTBEG00000011193 ortholog_many2many 2 retrogenes
retro_tbel_1293, retro_tbel_3405,
Tursiops truncatus ENSTTRG00000000119 possible_ortholog 1 retrogene
retro_ttru_1378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_69 94.17 98.10
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_1407 80.00 98.10
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_2536 87.74 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cjac_2733 67.01 92.38
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cjac_3010 63.64 73.33
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000017321 retrocopies