RetrogeneDB ID: | retro_acar_74 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:247146989..247147265(-) | ||
Located in intron of: | ENSACAG00000002222 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB4 | ||
Ensembl ID: | ENSACAG00000011462 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.13 % |
Parental protein coverage: | 67.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LRARLKHHYLMQLNDPRRTELIDDPAMTRWVYARSQNVYPNFRVTPKTSLFGALFGLGPIF-FWWYVIKT |
L...LK.HYL...NDP.RT.LIDD.A...W.YARS.N..PNF.V.PKTSLF..LFGLGP.F..WWYV.KT | |
Retrocopy | LHVCLKSHYLLEFNDPQRTQLIDDLAIMHWAYARSHNICPNFYVMPKTSLFCTLFGLGPCFLLWWYVFKT |
Parental | ERDYKEKLIQEGKYERPFHISY |
ER.YKE...QE.KY...FHISY | |
Retrocopy | ERNYKETPTQESKYQ*RFHISY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 26 .82 RPM |
SRP009831_brain | 0 .00 RPM | 58 .99 RPM |
SRP009831_dewlap | 0 .00 RPM | 20 .38 RPM |
SRP009831_embryo | 0 .00 RPM | 45 .82 RPM |
SRP009831_heart | 0 .05 RPM | 119 .38 RPM |
SRP009831_liver | 0 .00 RPM | 27 .12 RPM |
SRP009831_lung | 0 .00 RPM | 17 .28 RPM |
SRP009831_ovary | 0 .00 RPM | 27 .06 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 44 .54 RPM |