RetrogeneDB ID: | retro_acar_74 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | 1:247146989..247147265(-) | ||
| Located in intron of: | ENSACAG00000002222 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NDUFB4 | ||
| Ensembl ID: | ENSACAG00000011462 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_74
CTCCATGTCTGCCTCAAGAGCCATTATCTGTTGGAGTTCAATGACCCCCAGCGGACACAGCTCATTGATGACCTGGCCAT
AATGCATTGGGCTTATGCCAGGTCACATAATATCTGTCCTAATTTCTATGTCATGCCCAAAACATCTCTGTTTTGCACTC
TTTTTGGATTAGGACCCTGTTTCCTTCTCTGGTGGTATGTCTTTAAAACAGAAAGGAATTATAAAGAGACGCCCACACAG
GAAAGCAAGTATCAGTGACGGTTCCATATTTCCTAT
ORF - retro_acar_74 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.13 % |
| Parental protein coverage: | 67.91 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LRARLKHHYLMQLNDPRRTELIDDPAMTRWVYARSQNVYPNFRVTPKTSLFGALFGLGPIF-FWWYVIKT |
| L...LK.HYL...NDP.RT.LIDD.A...W.YARS.N..PNF.V.PKTSLF..LFGLGP.F..WWYV.KT | |
| Retrocopy | LHVCLKSHYLLEFNDPQRTQLIDDLAIMHWAYARSHNICPNFYVMPKTSLFCTLFGLGPCFLLWWYVFKT |
| Parental | ERDYKEKLIQEGKYERPFHISY |
| ER.YKE...QE.KY...FHISY | |
| Retrocopy | ERNYKETPTQESKYQ*RFHISY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .00 RPM | 26 .82 RPM |
| SRP009831_brain | 0 .00 RPM | 58 .99 RPM |
| SRP009831_dewlap | 0 .00 RPM | 20 .38 RPM |
| SRP009831_embryo | 0 .00 RPM | 45 .82 RPM |
| SRP009831_heart | 0 .05 RPM | 119 .38 RPM |
| SRP009831_liver | 0 .00 RPM | 27 .12 RPM |
| SRP009831_lung | 0 .00 RPM | 17 .28 RPM |
| SRP009831_ovary | 0 .00 RPM | 27 .06 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 44 .54 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_74 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_74 was not experimentally validated.