RetrogeneDB ID: | retro_amel_1167 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192985.1:668105..668921(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000007786 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:G1LMH6] |
Percent Identity: | 60.56 % |
Parental protein coverage: | 59.49 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | KPPLNLNQN-GKGKDS-HIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAAEMGKGSFKYAWVL |
KPPLNLNQN.GK.K....I....HVD.GKST.TGHL.YK..G..DKRTI.KFE.EAAEMG..SF...W.L | |
Retrocopy | KPPLNLNQN>GKEKTH>NIFITIHVDLGKSTATGHLTYKFAGM<DKRTIKKFE-EAAEMGRSSF*DVWLL |
Parental | DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKN |
...K...E....I...L.....S.........P...DFIKNMITG.SQ.DCA.LI....VG.F.A.ISKN | |
Retrocopy | G--KLKAEYKFSIITDLYENSRSASIM*QSWMP*GKDFIKNMITGISQTDCALLI----VG*FYAVISKN |
Parental | GQTREYALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN |
..T.E.ALLAYTLG.KQL.V.VNKMDSTE..YSQK..EEI.KEVSTYIKKIGYN.DT.AFVP.SGWNG.N | |
Retrocopy | RPTYEHALLAYTLGIKQLTVIVNKMDSTELHYSQKIKEEIIKEVSTYIKKIGYNLDTAAFVPVSGWNGNN |
Parental | MLEPS-ANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQD-VYKIGGIGTVPVGRVE |
MLEP...NM.WFKG.KVT.K...ASGTTL.E.LDCILPPT.P.DKPL.LPLQ...Y.....G.V..G... | |
Retrocopy | MLEPG<MNMAWFKG*KVTLKMA-ASGTTLPEILDCILPPTCPIDKPLCLPLQNWWYGTVPVGQVETGVLK |
Parental | TGVL |
.G.. | |
Retrocopy | PGMM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007786 | 14 retrocopies | |
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |