RetrogeneDB ID: | retro_amel_1457 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193418.1:706440..706642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VAMP4 | ||
Ensembl ID: | ENSAMEG00000016956 | ||
Aliases: | None | ||
Description: | vesicle-associated membrane protein 4 [Source:HGNC Symbol;Acc:12645] |
Percent Identity: | 77.94 % |
Parental protein coverage: | 50.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEED-FFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVM |
MPPK.K.HLND.DVTG.VKSERRNLLEDDSDE.ED....RGPSGP.FGP.N..IKHVQNQVDE.I.VM | |
Retrocopy | MPPKSKHHLNDGDVTGAVKSERRNLLEDDSDEGED>XXXRGPSGPGFGPINYEIKHVQNQVDEIIAVM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016956 | 1 retrocopy |
retro_amel_1457 ,
|
Felis catus | ENSFCAG00000013371 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011226 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000003811 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015609 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015967 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026745 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014342 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017179 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007424 | 1 retrocopy |