RetrogeneDB ID: | retro_shar_747 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL861726.1:487635..487864(-) | ||
Located in intron of: | ENSSHAG00000008926 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VAMP4 | ||
Ensembl ID: | ENSSHAG00000017179 | ||
Aliases: | None | ||
Description: | vesicle-associated membrane protein 4 [Source:HGNC Symbol;Acc:12645] |
Percent Identity: | 72.15 % |
Parental protein coverage: | 55.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPPKFKRHLNDDDVTGSVKSERRNLLEEDSDEEEDFFLRG-PSGPKFGPRNDKIRHVQNQVDEVIDVMQE |
M.PKFK..LNDD.V.G..K.ER.NLLEEDSDE..DFFL.G..SGPKFGP..DKIRHVQNQ..EVIDVM.E | |
Retrocopy | MLPKFKCYLNDDNVIGFMKGERKNLLEEDSDE--DFFLKG>SSGPKFGPQDDKIRHVQNQGSEVIDVMPE |
Parental | NITKVIERG |
N..K.IERG | |
Retrocopy | NTAKMIERG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016956 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000124 | 4 retrocopies | |
Felis catus | ENSFCAG00000013371 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011226 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000003811 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015609 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015967 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026745 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014342 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001709 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017179 | 2 retrocopies |
retro_shar_584, retro_shar_747 ,
|
Tupaia belangeri | ENSTBEG00000010829 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007424 | 1 retrocopy |