RetrogeneDB ID: | retro_amel_182 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192348.1:4202495..4202990(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSAMEG00000011563 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 67.86 % |
Parental protein coverage: | 79.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QMKETI-MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKK---LQLSLKKLGVNNISGIEEVNMF |
.MKETI..NQEKL.KLQAQVR.GGKGTA.R.K.VVHRTA.ADD.....LQ.S.KKLGVNN.SGIEEVNM. | |
Retrocopy | KMKETI>VNQEKLTKLQAQVRMGGKGTAQRRKQVVHRTAPADDXXXXXLQFSFKKLGVNNTSGIEEVNML |
Parental | -TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA |
..NQGTVI.FNNP.VQASLA.NT.T..G..ETKQ.TEMLP..L.QLGAD..T..R..AEA.P.Q.V.G.A | |
Retrocopy | <ANQGTVICFNNPEVQASLATNTLTSSGRTETKQPTEMLPRTLGQLGADGATRWRP-AEAPPTQPVAGEA |
Parental | PLATGEDDDDEVPDLVENFDEASKNEAN |
P.ATGEDDD.EVPD....F.E...NEA. | |
Retrocopy | PRATGEDDDYEVPDHLGTFGEVFQNEAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |