Parental gene:

CSA.1484, ENSCSAVG00000009653

Aliases:None
Description:None
Organism:Pacific transparent sea squirt (Ciona savignyi)
Coordinates:reftig_750:45635..48218(-)


>ENSCSAVG00000009653
ATGAATAAAGATAAATTGAATAAGTTGCAAGATCAAGTGAGAATTGGAGGAAAGGGTTCAGCTCGACGGAAGCGTAAAGT
TGTTCATCGTACCGCGACAACCGACGACAAGAAATTGCAAAGTTCCTTGAAGAAGTTGGCCGTGAATAATATTCCTGGGA
TCGAGGAGGTGAACATGATCAAGGACGACGGAAACGTGATCCACTTCAACAACCCCAAGGTCCAAGCCTCCCCCTCGGCC
AACACGTTCGCCGTCACCGGCCATGCCGAGAACAAACATCTGACGGAAATGTTGCCGAGTATTCTCAATCAACTGAACTT
CTACACTTGTTCACTGACCTCACTTAGTAAACTCGCATCTGGAATATCCAAGCCATCTAGTGGCCAGGAAAACCAACAAA
ACGAGGATGATGACGTACCTGATCTTACCGACAATTTTGATGAACCTTCGAAAAGTGAAGTGGTTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011563 ortholog_one2many 14 retrogenes
retro_amel_1257, retro_amel_1279, retro_amel_1324, retro_amel_1334, retro_amel_1433, retro_amel_166, retro_amel_1769, retro_amel_182, retro_amel_1841, retro_amel_480, retro_amel_513, retro_amel_784, retro_amel_908, retro_amel_986,
Bos taurus ENSBTAG00000010012 ortholog_one2many 5 retrogenes
retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Bos taurus ENSBTAG00000011025 ortholog_one2many 1 retrogene
retro_btau_1030,
Canis familiaris ENSCAFG00000003782 ortholog_one2many 2 retrogenes
retro_cfam_2135, retro_cfam_938,
Canis familiaris ENSCAFG00000008212 ortholog_one2many 3 retrogenes
retro_cfam_1660, retro_cfam_1741, retro_cfam_531,
Choloepus hoffmanni ENSCHOG00000001861 ortholog_one2many 13 retrogenes
retro_chof_1027, retro_chof_1166, retro_chof_117, retro_chof_1397, retro_chof_1406, retro_chof_1884, retro_chof_1960, retro_chof_2194, retro_chof_2682, retro_chof_2703, retro_chof_344, retro_chof_364, retro_chof_700,
Callithrix jacchus ENSCJAG00000016600 ortholog_one2many 4 retrogenes
retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Callithrix jacchus ENSCJAG00000021582 ortholog_one2many 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000004006 ortholog_one2many 1 retrogene
retro_cpor_908,
Cavia porcellus ENSCPOG00000012832 ortholog_one2many 1 retrogene
retro_cpor_81,
Dasypus novemcinctus ENSDNOG00000003181 ortholog_one2many 4 retrogenes
retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Dasypus novemcinctus ENSDNOG00000018682 ortholog_one2many 4 retrogenes
retro_dnov_1958, retro_dnov_2107, retro_dnov_497, retro_dnov_817,
Dipodomys ordii ENSDORG00000014031 ortholog_one2one 5 retrogenes
retro_dord_287, retro_dord_341, retro_dord_422, retro_dord_54, retro_dord_66,
Equus caballus ENSECAG00000021629 ortholog_one2many 1 retrogene
retro_ecab_200,
Erinaceus europaeus ENSEEUG00000004502 ortholog_one2one 3 retrogenes
retro_eeur_215, retro_eeur_447, retro_eeur_456,
Echinops telfairi ENSETEG00000011923 ortholog_one2many 11 retrogenes
retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Echinops telfairi ENSETEG00000017341 ortholog_one2many 5 retrogenes
retro_etel_1216, retro_etel_1394, retro_etel_1997, retro_etel_405, retro_etel_960,
Felis catus ENSFCAG00000023973 ortholog_one2many 10 retrogenes
retro_fcat_1044, retro_fcat_1378, retro_fcat_1438, retro_fcat_187, retro_fcat_188, retro_fcat_225, retro_fcat_28, retro_fcat_419, retro_fcat_593, retro_fcat_919,
Homo sapiens ENSG00000134717 ortholog_one2many 3 retrogenes
retro_hsap_2173, retro_hsap_2514, retro_hsap_3669,
Homo sapiens ENSG00000145741 ortholog_one2many 11 retrogenes
retro_hsap_1215, retro_hsap_1396, retro_hsap_2259, retro_hsap_2525, retro_hsap_2819, retro_hsap_2964, retro_hsap_3533, retro_hsap_3551, retro_hsap_3972, retro_hsap_4270, retro_hsap_625,
Gorilla gorilla ENSGGOG00000000166 ortholog_one2many 10 retrogenes
retro_ggor_1082, retro_ggor_1682, retro_ggor_1961, retro_ggor_2054, retro_ggor_2399, retro_ggor_2647, retro_ggor_2667, retro_ggor_548, retro_ggor_81, retro_ggor_946,
Loxodonta africana ENSLAFG00000016124 ortholog_one2many 3 retrogenes
retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii ENSMEUG00000006135 ortholog_one2one 10 retrogenes
retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Microcebus murinus ENSMICG00000002807 ortholog_one2many 1 retrogene
retro_mmur_804,
Microcebus murinus ENSMICG00000017182 ortholog_one2many 3 retrogenes
retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Myotis lucifugus ENSMLUG00000012912 ortholog_one2many 11 retrogenes
retro_mluc_1024, retro_mluc_1349, retro_mluc_1459, retro_mluc_1748, retro_mluc_1820, retro_mluc_1823, retro_mluc_2560, retro_mluc_2602, retro_mluc_482, retro_mluc_682, retro_mluc_694,
Myotis lucifugus ENSMLUG00000016884 ortholog_one2many 1 retrogene
retro_mluc_912,
Macaca mulatta ENSMMUG00000003636 ortholog_one2many 1 retrogene
retro_mmul_59,
Macaca mulatta ENSMMUG00000022291 ortholog_one2many 2 retrogenes
retro_mmul_105, retro_mmul_2424,
Monodelphis domestica ENSMODG00000000770 ortholog_one2many 2 retrogenes
retro_mdom_33, retro_mdom_992,
Monodelphis domestica ENSMODG00000001762 ortholog_one2many 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Mustela putorius furo ENSMPUG00000005864 ortholog_one2many 28 retrogenes
retro_mputfur_1125, retro_mputfur_1149, retro_mputfur_1267, retro_mputfur_1289, retro_mputfur_1319, retro_mputfur_1321, retro_mputfur_1386, retro_mputfur_1414, retro_mputfur_1472, retro_mputfur_1525, retro_mputfur_1548, retro_mputfur_1576, retro_mputfur_1599, retro_mputfur_246, retro_mputfur_324, retro_mputfur_392, retro_mputfur_403, retro_mputfur_431, retro_mputfur_618, retro_mputfur_661, retro_mputfur_724, retro_mputfur_728, retro_mputfur_753, retro_mputfur_760, retro_mputfur_795, retro_mputfur_901, retro_mputfur_926, retro_mputfur_972,
Mustela putorius furo ENSMPUG00000006966 ortholog_one2many 2 retrogenes
retro_mputfur_1444, retro_mputfur_924,
Mus musculus ENSMUSG00000021660 ortholog_one2many 11 retrogenes
retro_mmus_1904, retro_mmus_2445, retro_mmus_2769, retro_mmus_3054, retro_mmus_3272, retro_mmus_3344, retro_mmus_3525, retro_mmus_443, retro_mmus_451, retro_mmus_470, retro_mmus_707,
Mus musculus ENSMUSG00000028568 ortholog_one2many 2 retrogenes
retro_mmus_1134, retro_mmus_2743,
Nomascus leucogenys ENSNLEG00000004718 ortholog_one2many 9 retrogenes
retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Nomascus leucogenys ENSNLEG00000016041 ortholog_one2many 2 retrogenes
retro_nleu_1439, retro_nleu_521,
Oryctolagus cuniculus ENSOCUG00000001517 ortholog_one2many 3 retrogenes
retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Oryctolagus cuniculus ENSOCUG00000024914 ortholog_one2many 6 retrogenes
retro_ocun_1186, retro_ocun_1299, retro_ocun_1364, retro_ocun_446, retro_ocun_857, retro_ocun_916,
Otolemur garnettii ENSOGAG00000013918 ortholog_one2many 1 retrogene
retro_ogar_46,
Otolemur garnettii ENSOGAG00000030256 ortholog_one2many 2 retrogenes
retro_ogar_2759, retro_ogar_570,
Ochotona princeps ENSOPRG00000013335 ortholog_one2one 2 retrogenes
retro_opri_719, retro_opri_974,
Procavia capensis ENSPCAG00000006428 ortholog_one2many 3 retrogenes
retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii ENSPPYG00000001353 ortholog_one2many 2 retrogenes
retro_pabe_1850, retro_pabe_3010,
Pongo abelii ENSPPYG00000029576 ortholog_one2many 14 retrogenes
retro_pabe_1154, retro_pabe_1477, retro_pabe_180, retro_pabe_1885, retro_pabe_1956, retro_pabe_2207, retro_pabe_2458, retro_pabe_2918, retro_pabe_2919, retro_pabe_2932, retro_pabe_3329, retro_pabe_3484, retro_pabe_558, retro_pabe_649,
Pan troglodytes ENSPTRG00000000735 ortholog_one2many 3 retrogenes
retro_ptro_1459, retro_ptro_1658, retro_ptro_2489,
Pan troglodytes ENSPTRG00000016979 ortholog_one2many 12 retrogenes
retro_ptro_1470, retro_ptro_1599, retro_ptro_1675, retro_ptro_1912, retro_ptro_2006, retro_ptro_2413, retro_ptro_2494, retro_ptro_2697, retro_ptro_2896, retro_ptro_455, retro_ptro_832, retro_ptro_959,
Pteropus vampyrus ENSPVAG00000007160 ortholog_one2many 11 retrogenes
retro_pvam_1011, retro_pvam_241, retro_pvam_301, retro_pvam_440, retro_pvam_456, retro_pvam_515, retro_pvam_602, retro_pvam_647, retro_pvam_70, retro_pvam_882, retro_pvam_919,
Rattus norvegicus ENSRNOG00000008512 ortholog_one2many 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Rattus norvegicus ENSRNOG00000016912 ortholog_one2many 9 retrogenes
retro_rnor_187, retro_rnor_194, retro_rnor_2121, retro_rnor_2520, retro_rnor_2990, retro_rnor_2991, retro_rnor_2999, retro_rnor_836, retro_rnor_953,
Sorex araneus ENSSARG00000003173 ortholog_one2many 2 retrogenes
retro_sara_680, retro_sara_690,
Sorex araneus ENSSARG00000007736 ortholog_one2many 5 retrogenes
retro_sara_195, retro_sara_279, retro_sara_354, retro_sara_427, retro_sara_74,
Ictidomys tridecemlineatus ENSSTOG00000006129 ortholog_one2many 6 retrogenes
retro_itri_1309, retro_itri_402, retro_itri_459, retro_itri_541, retro_itri_701, retro_itri_810,
Tupaia belangeri ENSTBEG00000013307 ortholog_one2many 30 retrogenes
retro_tbel_1050, retro_tbel_1052, retro_tbel_1178, retro_tbel_1595, retro_tbel_1642, retro_tbel_1785, retro_tbel_1883, retro_tbel_1924, retro_tbel_2245, retro_tbel_2290, retro_tbel_2532, retro_tbel_2979, retro_tbel_3092, retro_tbel_3100, retro_tbel_3340, retro_tbel_3469, retro_tbel_3483, retro_tbel_3520, retro_tbel_3583, retro_tbel_3598, retro_tbel_3986, retro_tbel_4045, retro_tbel_4278, retro_tbel_4283, retro_tbel_4563, retro_tbel_4623, retro_tbel_539, retro_tbel_701, retro_tbel_98, retro_tbel_991,
Tarsius syrichta ENSTSYG00000001295 ortholog_one2many 7 retrogenes
retro_tsyr_1360, retro_tsyr_1388, retro_tsyr_212, retro_tsyr_707, retro_tsyr_878, retro_tsyr_90, retro_tsyr_954,
Tarsius syrichta ENSTSYG00000013635 ortholog_one2many 3 retrogenes
retro_tsyr_1576, retro_tsyr_1822, retro_tsyr_2045,
Tursiops truncatus ENSTTRG00000007290 ortholog_one2many 2 retrogenes
retro_ttru_1883, retro_ttru_391,
Vicugna pacos ENSVPAG00000009607 ortholog_one2many 2 retrogenes
retro_vpac_185, retro_vpac_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_csav_25 70.65 85.98
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Download FASTA sequences of all ENSCSAVG00000009653 retrocopies