Parental gene:

BTF3, ENSECAG00000021629

Aliases:None
Description:basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]
Organism:Horse (Equus caballus)
Coordinates:14:90827309..90834700(-)


>ENSECAG00000021629
ATGAAAGAAACTATCATGAACCAGGAGAAACTCGCCAAACTCCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
CAGAAAGAAGAAGGTGGTTCATAGAACAGCCACGGCAGACGATAAGAAACTCCAGTTCTCCTTGAAGAAGTTAGGGGTGA
ACAACATCTCCGGTATCGAAGAGGCAAGTGTGAATATGTTCACAAACCAAGGGACAGTGATCCACTTCAACAACCCCAAA
GTTCAGGCGTCCCTGGCAGCGAACACGTTCACCATTACAGGCCACGCCGAGACCAAGCAGCTGACAGAAATGCTGCCCAG
CATCCTCAACCAGCTCGGTGCCGACAGTCTGACCAGTTTAAGGAGACTGGCTGAAGCGCTGCCCAAACAATCTGTGGATG
GAAAAGCACCACTCGCCACAGGAGAGGAGGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAG
AATGAGGCAAACTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 158 .40 RPM
SRP021940_embryo 201 .79 RPM
SRP021940_cerebellum 82 .83 RPM
SRP021940_testis 213 .89 RPM
SRP021940_placental_villous 132 .11 RPM
SRP021940_articular_cartilage 192 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011563 possible_ortholog 14 retrogenes
retro_amel_1257, retro_amel_1279, retro_amel_1324, retro_amel_1334, retro_amel_1433, retro_amel_166, retro_amel_1769, retro_amel_182, retro_amel_1841, retro_amel_480, retro_amel_513, retro_amel_784, retro_amel_908, retro_amel_986,
Bos taurus ENSBTAG00000010012 ortholog_one2one 5 retrogenes
retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Canis familiaris ENSCAFG00000008212 possible_ortholog 3 retrogenes
retro_cfam_1660, retro_cfam_1741, retro_cfam_531,
Callithrix jacchus ENSCJAG00000016600 ortholog_one2many 4 retrogenes
retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Cavia porcellus ENSCPOG00000012832 possible_ortholog 1 retrogene
retro_cpor_81,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Echinops telfairi ENSETEG00000017341 possible_ortholog 5 retrogenes
retro_etel_1216, retro_etel_1394, retro_etel_1997, retro_etel_405, retro_etel_960,
Felis catus ENSFCAG00000023973 possible_ortholog 10 retrogenes
retro_fcat_1044, retro_fcat_1378, retro_fcat_1438, retro_fcat_187, retro_fcat_188, retro_fcat_225, retro_fcat_28, retro_fcat_419, retro_fcat_593, retro_fcat_919,
Gorilla gorilla ENSGGOG00000000166 possible_ortholog 10 retrogenes
retro_ggor_1082, retro_ggor_1682, retro_ggor_1961, retro_ggor_2054, retro_ggor_2399, retro_ggor_2647, retro_ggor_2667, retro_ggor_548, retro_ggor_81, retro_ggor_946,
Myotis lucifugus ENSMLUG00000012912 possible_ortholog 11 retrogenes
retro_mluc_1024, retro_mluc_1349, retro_mluc_1459, retro_mluc_1748, retro_mluc_1820, retro_mluc_1823, retro_mluc_2560, retro_mluc_2602, retro_mluc_482, retro_mluc_682, retro_mluc_694,
Macaca mulatta ENSMMUG00000022291 possible_ortholog 2 retrogenes
retro_mmul_105, retro_mmul_2424,
Monodelphis domestica ENSMODG00000001762 possible_ortholog 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Otolemur garnettii ENSOGAG00000013918 possible_ortholog 1 retrogene
retro_ogar_46,
Pongo abelii ENSPPYG00000029576 possible_ortholog 14 retrogenes
retro_pabe_1154, retro_pabe_1477, retro_pabe_180, retro_pabe_1885, retro_pabe_1956, retro_pabe_2207, retro_pabe_2458, retro_pabe_2918, retro_pabe_2919, retro_pabe_2932, retro_pabe_3329, retro_pabe_3484, retro_pabe_558, retro_pabe_649,
Rattus norvegicus ENSRNOG00000016912 possible_ortholog 9 retrogenes
retro_rnor_187, retro_rnor_194, retro_rnor_2121, retro_rnor_2520, retro_rnor_2990, retro_rnor_2991, retro_rnor_2999, retro_rnor_836, retro_rnor_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_200 64.29 50.61
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Download FASTA sequences of all ENSECAG00000021629 retrocopies