RetrogeneDB ID: | retro_amel_911 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192737.1:183332..183701(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STX8 | ||
Ensembl ID: | ENSAMEG00000002045 | ||
Aliases: | None | ||
Description: | syntaxin 8 [Source:HGNC Symbol;Acc:11443] |
Percent Identity: | 61.42 % |
Parental protein coverage: | 53.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SLMTGGAKRGVPNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQ |
.LMT...K...P...LFEEP.ETRGL.FDEI.Q.QQKII..Q..GL..LS.I..R.KQ.G..I...LD.Q | |
Retrocopy | TLMTKETKKETPA--LFEEPGETRGLHFDEISQ*QQKII*DQVVGLAVLSFIKNRHKQKGQKIAKDLDKQ |
Parental | NEIIDDLANLVENTDGRLRTETRRVNMVDRKSTSCGMVMVILLLLVAIVVVAVWPTN |
NEIIDD.ANLV.NTD..L.TETR.VNMVDR..TSCG...VILL.LVAI.....W.TN | |
Retrocopy | NEIIDDFANLVKNTDEKLHTETRHVNMVDRNLTSCGFIIVILLSLVAIML--LWSTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002045 | 1 retrocopy |
retro_amel_911 ,
|
Canis familiaris | ENSCAFG00000017413 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002114 | 1 retrocopy | |
Felis catus | ENSFCAG00000008276 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008612 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007815 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001001 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003849 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010795 | 1 retrocopy |