RetrogeneDB ID: | retro_cpor_1034 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:21152156..21152864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STX8 | ||
Ensembl ID: | ENSCPOG00000002114 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAPDPWFSTYDSTCQIAQDIAEKIQQRNQYERRGEKTPKLTVAIRTSLQNLKEKIALLKDLLLRAVSTHQ |
MAPD.WFS.YDSTCQIA..I.EKIQQ.NQYER.G.KT.KLT.AIRT.L.NLK.KIALL.DLLLR.VSTHQ | |
Retrocopy | MAPDLWFSIYDSTCQIA*EITEKIQQ*NQYERKGKKTSKLTMAIRTLLLNLKKKIALLEDLLLRVVSTHQ |
Parental | ITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMREEAKRGAPNPWLFEEPEETRGLGFDEL |
ITQLEGD.RQNLLDDLVT.ERLLLASFKN..AEPDLIR.SLMR.EAK.G.PNPWLFEE.EE.RGLGFDEL | |
Retrocopy | ITQLEGDQRQNLLDDLVTQERLLLASFKNKCAEPDLIRPSLMRKEAK*GTPNPWLFEELEEIRGLGFDEL |
Parental | RQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTETRRVTLVDRK |
...QQKIIQ.QDA.L...S.IIS.Q.QMGQEI.NELDEQ..IIDDL.NLV.NTDEK..TE.R..TLVDRK | |
Retrocopy | WKLQQKIIQKQDASLGSPSPIISCQRQMGQEIENELDEQSKIIDDLVNLVGNTDEKFHTENRHMTLVDRK |
Parental | STSCGMIMVILLLLVAIVVVAVWPTN |
STSCGMIMVILLLLVAIV..AVWPTN | |
Retrocopy | STSCGMIMVILLLLVAIVAIAVWPTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .90 RPM |
SRP017611_liver | 0 .00 RPM | 8 .23 RPM |
SRP040447_lung | 0 .00 RPM | 18 .69 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 10 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002045 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017413 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002114 | 1 retrocopy |
retro_cpor_1034 ,
|
Felis catus | ENSFCAG00000008276 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008612 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007815 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001001 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003849 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010795 | 1 retrocopy |