>retro_btau_1356
ATGAGCTGTAACCGCTCCATCACCGTCTTCTCTCCCAACGGCCACCTCTTCCCAGTGGAGTACTTGCAGGAGGCCATGAA
GAAGGGCTGGACCATGGTCAGTGTTCGAGGAAAAGACATTGTTGTTCTTGGTGTGGAGAAGTCAGTGGCCAAACTGCAGG
ATGAAAGGACAGGGCGGAAGGTCTGTGCTCTGGATGATAATGTCTGCATGGCATTCGCCGACTCACTGCTAACGCAAGGA
TAGTCACCAACAGGGCCCGGGTGGAATGCCAGAGCCACCGGCTGACTGTGGAGGACCTAGTCACCATGGAGTACATCACC
CGTTATATCGCCAGTCTGAAGCAGCGCTACACACAGAGCAAGGAGCGCTGGGGGTTTGGCATCTCTGCCCTCCTTGTGGG
TTTTGACTTTGATGGCACCCCCGACTCTATCAGACTGACCTCCCAGCACATACCATGCCTGGAAAGCCAATGCTGTAGGC
CAGGTTGCCAAGTCAGTGCGTGAATTCCTAGAGAATTATACTGAGGAAGCCATTGAAACC
ORF - retro_btau_1356 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.26 % |
Parental protein coverage: |
73.79 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVC |
| MS..R.ITVFSP.GHLF.VEY.QEA.KKG.T.V.VRGKDIVVLGVEK.SVAKLQDERT.RK.CALDDNVC |
Retrocopy | MSCNRSITVFSPNGHLFPVEYLQEAMKKGWTMVSVRGKDIVVLGVEK-SVAKLQDERTGRKVCALDDNVC |
|
Parental | MAFAG-LTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFD |
| MAFA..LTA.ARIV.NRARVECQSHRLTVED.VT.EYITRYIASLKQRYTQS..R..FGISAL.VGFDFD |
Retrocopy | MAFAD<LTANARIVTNRARVECQSHRLTVEDLVTMEYITRYIASLKQRYTQSKERWGFGISALLVGFDFD |
|
Parental | GT-PRLYQTD-PSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIET |
| GT.PRLYQTD.P..TYHAWKANA.G..AKSVREFLE.NYT.EAIET |
Retrocopy | GT<PRLYQTD<PPSTYHAWKANAVGQVAKSVREFLE-NYTEEAIET |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
88 .82 RPM |
ERP005899_muscle |
0 .00 RPM |
130 .13 RPM |
SRP017611_brain |
0 .00 RPM |
44 .31 RPM |
SRP017611_kidney |
0 .00 RPM |
96 .44 RPM |
SRP017611_liver |
0 .00 RPM |
66 .98 RPM |
SRP030211_testis |
0 .88 RPM |
21 .49 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1356 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1356 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1356 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.