RetrogeneDB ID: | retro_tbel_2392 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_109905:14239..14777(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA7 | ||
Ensembl ID: | ENSTBEG00000012281 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 7 [Source:HGNC Symbol;Acc:9536] |
Percent Identity: | 57.69 % |
Parental protein coverage: | 83.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYVA |
L..EKKS.AKLQD.R.V.K..A.DDN.C.A.AG..ADARI....A.VECQSH...VE..VTVEYI..YVA | |
Retrocopy | LDMEKKSMAKLQDKRMVQKFSAQDDNICVAIAGFIADARIT-SQAQVECQSHWIMVEVLVTVEYIMYYVA |
Parental | SLKQRYTQSNGRRPFGISA-LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTEDAM |
SLKQ.Y...N...PF.....LIVGFDF..T.....TD..GT.HA.KAN.I...AKSV.EFL.KNYT.... | |
Retrocopy | SLKQDYMLNNWCGPFDXXX>LIVGFDFKCTHKS*-TDTLGTHHALKANTIDLVAKSVHEFLAKNYTDETI |
Parental | DSADLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPE |
...DLT.KLVIK.LLEVV....KN.....MR...PLK.LNPE | |
Retrocopy | ETDDLTSKLVIKTLLEVVRPRSKNSDFTMMR*NRPLKSLNPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005127 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014419 | 1 retrocopy | |
Felis catus | ENSFCAG00000003249 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008630 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012489 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012281 | 2 retrocopies |
retro_tbel_1048, retro_tbel_2392 ,
|
Drosophila melanogaster | FBgn0004066 | 1 retrocopy |