RetrogeneDB ID: | retro_dmel_63 | ||
Retrocopylocation | Organism: | Fruit fly (Drosophila melanogaster) | |
Coordinates: | 3R:16573990..16574740(-) | ||
Located in intron of: | FBgn0259222 | ||
Retrocopyinformation | Ensembl ID: | FBgn0017557 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pros28.1 | ||
Ensembl ID: | FBgn0004066 | ||
Aliases: | None | ||
Description: | Proteasome 28kD subunit 1 [Source:FlyBase gene name;Acc:FBgn0004066] |
Percent Identity: | 75.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNH |
MSSRY.RA.TIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEK.SV...QEDR.VRKI.MLD.H | |
Retrocopy | MSSRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRH |
Parental | VVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDA |
V..AFAGLTADARI.INR.QVECQSHRLN.E..VTLEYITR..AQLKQKYTQ.NGRRPFGISCLIGG.DA | |
Retrocopy | VALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDA |
Parental | DGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQSGQNNLEV |
DGSA.LF.TEPSGIF.EYKA.ATGR.A..VREFFEK.Y...EV.....A.KLA.RALLEV.Q..Q..LEV | |
Retrocopy | DGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEVTQMSQMRLEV |
Parental | AIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK |
A..ENGKP.KMLD..VI...VKI...EKE......K.K. | |
Retrocopy | AVLENGKPMKMLDSVVISEIVKIVQNEKELQAKAHKMKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005127 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014419 | 1 retrocopy | |
Felis catus | ENSFCAG00000003249 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013254 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008630 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012489 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012281 | 2 retrocopies | |
Drosophila melanogaster | FBgn0004066 | 1 retrocopy |
retro_dmel_63 ,
|