RetrogeneDB ID: | retro_tbel_1048 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3681:244481..244872(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA7 | ||
Ensembl ID: | ENSTBEG00000012281 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 7 [Source:HGNC Symbol;Acc:9536] |
Percent Identity: | 69.92 % |
Parental protein coverage: | 60.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPV |
....G..IVV.GV..KSV.KLQD.RTVRK.C.LDD.VCMAFAGLT.DAR.VINRA.VECQ.H.LTVEDPV | |
Retrocopy | IAI*GTQIVVRGVGNKSVVKLQDKRTVRKMCTLDDHVCMAFAGLTTDARVVINRACVECQGHKLTVEDPV |
Parental | TVEYITRYVASLKQRYTQSNGRRPFGISALIVGFDFDGT-PRL-YQTDPSGTYHAWKANAIGR |
TVE..T...A.LKQ.YTQSNG.RP..ISALI.GFD.DG..P...YQTD.SGTYHA.KANA..R | |
Retrocopy | TVECVTHFIATLKQKYTQSNGQRPLAISALIIGFDDDGI<PKI<YQTDLSGTYHAQKANATVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005127 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014419 | 1 retrocopy | |
Felis catus | ENSFCAG00000003249 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008630 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012489 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012281 | 2 retrocopies |
retro_tbel_1048 , retro_tbel_2392,
|
Drosophila melanogaster | FBgn0004066 | 1 retrocopy |