RetrogeneDB ID: | retro_btau_684 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 17:57668109..57668430(-) | ||
Located in intron of: | ENSBTAG00000001164 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSBTAG00000008967 | ||
Aliases: | None | ||
Description: | Ras-related protein Rap-1b [Source:UniProtKB/Swiss-Prot;Acc:P61223] |
Percent Identity: | 99.07 % |
Parental protein coverage: | 58.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS |
FALVYSITAQSTFNDLQDLREQILRVKDT.DVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS | |
Retrocopy | FALVYSITAQSTFNDLQDLREQILRVKDTHDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS |
Parental | AKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL |
AKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL | |
Retrocopy | AKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .36 RPM | 45 .28 RPM |
ERP005899_muscle | 0 .05 RPM | 58 .75 RPM |
SRP017611_brain | 0 .14 RPM | 29 .69 RPM |
SRP017611_kidney | 0 .12 RPM | 61 .64 RPM |
SRP017611_liver | 0 .15 RPM | 15 .33 RPM |
SRP030211_testis | 0 .06 RPM | 42 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008967 | 3 retrocopies |
retro_btau_1564, retro_btau_297, retro_btau_684 ,
|
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000000242 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies |