RetrogeneDB ID: | retro_cpor_632 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:25220327..25220695(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSCPOG00000008272 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 83.06 % |
Parental protein coverage: | 66.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQG |
EQFT.M.DLY.KNG.G.ALVY.ITAQSTFNDLQDLREQ.LRVKDT.DVPMILVGNK.DLE.ERVVGKEQG | |
Retrocopy | EQFTTMTDLYIKNG*GLALVYFITAQSTFNDLQDLREQVLRVKDTEDVPMILVGNK*DLENERVVGKEQG |
Parental | QNLARQWNNCAFLESSAKSKINVNEI-FYDLVRQINRKTPVPGKARKKSSCQLL |
QNLA.Q...CAF..SSAKSKI.VNEI.FYDLV.QINRKTPV.GKA.KKSSCQLL | |
Retrocopy | QNLASQGHDCAFIASSAKSKISVNEI<FYDLVQQINRKTPVTGKAHKKSSCQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 17 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .36 RPM |
SRP017611_liver | 0 .00 RPM | 23 .55 RPM |
SRP040447_lung | 0 .00 RPM | 50 .06 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 8 .67 RPM |