RetrogeneDB ID: | retro_cpor_85 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:1795205..1795757(+) | ||
Located in intron of: | ENSCPOG00000003743 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000011958 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSCPOG00000008272 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 93.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL |
MREYKLV..GSGG.GKSALTVQF.QGIFVEKYDPTIEDSYRKQVEVDAQQCML.ILDTAGTEQFTAMRDL | |
Retrocopy | MREYKLVIPGSGGTGKSALTVQFFQGIFVEKYDPTIEDSYRKQVEVDAQQCMLGILDTAGTEQFTAMRDL |
Parental | YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN |
YMKNGQGFALVYSITAQSTFNDLQDLREQIL.VKDTDDVPMILVGNKCDLED.RVVGKEQGQNLARQWNN | |
Retrocopy | YMKNGQGFALVYSITAQSTFNDLQDLREQILGVKDTDDVPMILVGNKCDLEDKRVVGKEQGQNLARQWNN |
Parental | CAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL |
CAFLESS.KSKINVNEIFYDLV.QINRKTPVPGKA...SSCQLL | |
Retrocopy | CAFLESSTKSKINVNEIFYDLVWQINRKTPVPGKAHNESSCQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 17 .49 RPM |
SRP017611_kidney | 0 .94 RPM | 21 .36 RPM |
SRP017611_liver | 1 .18 RPM | 23 .55 RPM |
SRP040447_lung | 1 .77 RPM | 50 .06 RPM |
SRP040447_skeletal_muscle | 0 .42 RPM | 8 .67 RPM |