RetrogeneDB ID: | retro_cfam_1236 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 27:4239215..4239674(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCAFG00000008021 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L7 (RPL7), mRNA. [Source:RefSeq mRNA;Acc:NM_001252227] |
Percent Identity: | 73.55 % |
Parental protein coverage: | 61.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKK |
RG..GVSP.V.KVLQ.L.L.QIFNG.FVK.NKASVN.LR.VEPYIAWGYPN....NE..YKR..GK.NKK | |
Retrocopy | RGVSGVSPEVQKVLQFLHLCQIFNGIFVKFNKASVNTLRFVEPYIAWGYPNMTLANEWTYKRSSGKVNKK |
Parental | RIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF-LWPFKLSSPRGGMKKKTTHFVEGG-DA |
.I.LTDNTLIA.SLG.Y..ICMED.IH.IYTVGK.FK..NNF.LWP.KLSSP.GG.KKK.THFVEG..D. | |
Retrocopy | *IVLTDNTLIASSLGMYNLICMEDVIHQIYTVGKCFKKTNNF>LWPSKLSSP*GGIKKKITHFVEGE<DV |
Parental | GNREDQINRLIRRMN |
G.REDQINR.IRRMN | |
Retrocopy | GYREDQINRFIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 454 .47 RPM |
SRP017611_brain | 0 .00 RPM | 183 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 893 .22 RPM |
SRP017611_liver | 0 .00 RPM | 289 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001821 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000001728 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008021 | 28 retrocopies |
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236 , retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445, retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
|
Dasypus novemcinctus | ENSDNOG00000017654 | 15 retrocopies | |
Felis catus | ENSFCAG00000028446 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000003571 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016319 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000007136 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000006182 | 3 retrocopies |