RetrogeneDB ID: | retro_dnov_655 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_7308:144401..144724(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000009121 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSDNOG00000017654 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 67.57 % |
Parental protein coverage: | 58.51 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | PETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVP |
PET.K.K..NFAELKIK.LRKKFA.KML.K.R.KL.YEK.KH.HKEYR..YRTEI..A.MARK...FYV. | |
Retrocopy | PETYK*K*KNFAELKIKHLRKKFA*KMLQKTRKKLVYEKTKHNHKEYR*IYRTEI*IAGMARKSSSFYVS |
Parental | AEPKLAFVIRIRGINGVSPKVR-KVLQLLRLRQIFNGTFVK |
AE.K..F.IRIR.I.GVSPK....VL.LL...QIFNGTF.K | |
Retrocopy | AECK--FIIRIRSITGVSPKIK<RVLHLLHFHQIFNGTFAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 220 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 120 .56 RPM |
SRP012922_heart | 0 .00 RPM | 123 .90 RPM |
SRP012922_kidney | 0 .00 RPM | 273 .80 RPM |
SRP012922_liver | 0 .00 RPM | 112 .70 RPM |
SRP012922_lung | 0 .15 RPM | 262 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 188 .66 RPM |
SRP012922_spleen | 0 .00 RPM | 342 .58 RPM |