RetrogeneDB ID: | retro_cfam_1654 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:36278973..36279222(+) | ||
Located in intron of: | ENSCAFG00000016541 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000016545 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | cfa-mir-147 | ||
Ensembl ID: | ENSCAFG00000031501 | ||
Aliases: | None | ||
Description: | cfa-mir-147 [Source:miRBase;Acc:MI0010371] |
Percent Identity: | 95.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNFFQLLMKKKELIPLVLFMATAAGGASSFAVYSLQKSDVILDRKRNPEPWETVDPSVPSKLITINQEWK |
.NFFQLLMKKKELIPLVLFMATAAGGASSF.VYSLQKSDVILDRKRNPEPWET.DPSVPSKLITINQEWK | |
Retrocopy | INFFQLLMKKKELIPLVLFMATAAGGASSFDVYSLQKSDVILDRKRNPEPWETMDPSVPSKLITINQEWK |
Parental | PIEELQKVRRATK |
PIEEL.KVRRATK | |
Retrocopy | PIEELRKVRRATK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 0 .17 RPM |
SRP017611_brain | 0 .24 RPM | 0 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .63 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031501 | 2 retrocopies |
retro_cfam_1654 , retro_cfam_669,
|
Cavia porcellus | ENSCPOG00000020706 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003556 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013137 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000028279 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029216 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050251 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006433 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000021929 | 1 retrocopy |