RetrogeneDB ID: | retro_shar_296 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841251.1:295952..296202(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000006433 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNFFQFLMKKKELIPLIAFVSIAGSGAAYMATYS-FFKSDVIVNRWQNPEPWENVNPSKPQKLVTINQRW |
MNF.Q.LMKKKELIPL..FVSI.G..AA.M..YS.FFKSDVIVNR..NPEPWENVNP.KPQKL.TINQ.W | |
Retrocopy | MNFLQLLMKKKELIPLVTFVSITGI*AASMSIYS>FFKSDVIVNRRKNPEPWENVNPYKPQKLLTINQKW |
Parental | EPVEELQAIKKLTK |
E.VEEL...K.LTK | |
Retrocopy | ELVEEL*TVKELTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031501 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020706 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003556 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000028279 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029216 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050251 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006433 | 3 retrocopies |
retro_shar_296 , retro_shar_416, retro_shar_744,
|
Ictidomys tridecemlineatus | ENSSTOG00000021929 | 1 retrocopy |