RetrogeneDB ID: | retro_cfam_1794 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:46294451..46294747(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPY30 | ||
Ensembl ID: | ENSCAFG00000005708 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MEPEQMLEGQTQVAENPH-SEYGLTDNVERIVDNEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGL |
.EPEQ..E...QVAE.P.....GL..NV..I.DNE.INAEKSSKQKVDLQSLPTRA.LDQTVVPIL..GL | |
Retrocopy | LEPEQTPERRMQVAESPR<LKDGLAHNVDGIADNEEINAEKSSKQKVDLQSLPTRASLDQTVVPIL*PGL |
Parental | AVLAKERPPNPIEFLASYLLKNKAQFEDRN |
AVLAK.RPPNPIEFLA.YLL.NKA..ED.N | |
Retrocopy | AVLAKQRPPNPIEFLA*YLLENKAELEDQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 19 .95 RPM |
SRP017611_brain | 0 .00 RPM | 10 .40 RPM |
SRP017611_kidney | 0 .07 RPM | 38 .30 RPM |
SRP017611_liver | 0 .00 RPM | 10 .44 RPM |