Parental gene:

DPY30, ENSCAFG00000005708

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:17:25367167..25378128(-)


>ENSCAFG00000005708
ATGGAGCCAGAGCAGATGCTGGAGGGGCAGACGCAGGTTGCAGAAAACCCTCACTCTGAGTACGGTCTCACAGACAATGT
GGAGAGGATAGTAGACAATGAGAAGATTAATGCAGAAAAGTCATCAAAACAGAAAGTGGATCTCCAGTCTTTGCCAACTC
GTGCCTACCTGGATCAGACAGTTGTGCCTATTTTATTACAGGGCCTTGCTGTGCTTGCAAAAGAAAGGATACTTTTCCAA
GACAAGAATAATTCATGGAAAAAAAATAAAAAAATCTCTGCCAGCTTTTCTCAGCGTTGTCCCTGGACCTCTTGGAGGGT
GGGATCTTTGCATCTTCAGTTTTTAATATCAGAGCATAGA

Library Parental gene expression (RPM)
SRP017611_brain 10 .40 RPM
SRP017611_kidney 38 .30 RPM
SRP017611_liver 10 .44 RPM
SRP012049_cerebellum 19 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007768 ortholog_one2one 1 retrogene
retro_amel_89,
Equus caballus ENSECAG00000019630 ortholog_one2one 1 retrogene
retro_ecab_676,
Erinaceus europaeus ENSEEUG00000012471 ortholog_one2one 1 retrogene
retro_eeur_239,
Echinops telfairi ENSETEG00000006389 ortholog_one2one 4 retrogenes
retro_etel_1156, retro_etel_1592, retro_etel_1796, retro_etel_682,
Felis catus ENSFCAG00000026246 ortholog_one2one 1 retrogene
retro_fcat_1883,
Macropus eugenii ENSMEUG00000006193 ortholog_one2one 1 retrogene
retro_meug_335,
Myotis lucifugus ENSMLUG00000015346 ortholog_one2one 2 retrogenes
retro_mluc_2327, retro_mluc_2367,
Monodelphis domestica ENSMODG00000015481 ortholog_one2one 1 retrogene
retro_mdom_1962,
Mustela putorius furo ENSMPUG00000005211 ortholog_one2one 1 retrogene
retro_mputfur_1063,
Mus musculus ENSMUSG00000024067 ortholog_one2one 1 retrogene
retro_mmus_1867,
Oryctolagus cuniculus ENSOCUG00000017877 ortholog_one2one 1 retrogene
retro_ocun_1751,
Otolemur garnettii ENSOGAG00000034197 ortholog_one2one 2 retrogenes
retro_ogar_3326, retro_ogar_3420,
Ochotona princeps ENSOPRG00000011833 ortholog_one2one 1 retrogene
retro_opri_890,
Pteropus vampyrus ENSPVAG00000005599 ortholog_one2one 1 retrogene
retro_pvam_1128,
Rattus norvegicus ENSRNOG00000027126 ortholog_one2one 1 retrogene
retro_rnor_2141,
Ictidomys tridecemlineatus ENSSTOG00000013372 ortholog_one2one 2 retrogenes
retro_itri_361, retro_itri_75,
Tupaia belangeri ENSTBEG00000017486 ortholog_one2one 5 retrogenes
retro_tbel_1154, retro_tbel_1311, retro_tbel_1312, retro_tbel_3073, retro_tbel_4675,
Tarsius syrichta ENSTSYG00000000146 ortholog_one2one 1 retrogene
retro_tsyr_1052,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1794 73.00 100.00
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Download FASTA sequences of all ENSCAFG00000005708 retrocopies