RetrogeneDB ID: | retro_tbel_3073 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_129217:96573..96870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPY30 | ||
Ensembl ID: | ENSTBEG00000017486 | ||
Aliases: | None | ||
Description: | dpy-30 homolog (C. elegans) [Source:HGNC Symbol;Acc:24590] |
Percent Identity: | 91.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEPEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLA |
MEPEQML.GQ.QVAENPHSEY.LTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLA | |
Retrocopy | MEPEQMLQGQMQVAENPHSEYDLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLA |
Parental | VLAKXXPPNPIEFLASYLLKNKAQFEDQN |
VL.K..PPNPIEFLASY.LKNKAQFED.N | |
Retrocopy | VLTKERPPNPIEFLASYFLKNKAQFEDRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007768 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005708 | 1 retrocopy | |
Equus caballus | ENSECAG00000019630 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012471 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006389 | 4 retrocopies | |
Felis catus | ENSFCAG00000026246 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006193 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015346 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015481 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005211 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024067 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017877 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034197 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011833 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005599 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027126 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013372 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017486 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000146 | 1 retrocopy |