RetrogeneDB ID: | retro_cfam_497 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:55195189..55196359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STIP1 | ||
Ensembl ID: | ENSCAFG00000014672 | ||
Aliases: | None | ||
Description: | stress-induced-phosphoprotein 1 [Source:HGNC Symbol;Acc:11387] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 71.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IKQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD |
..QVNELKEKG.KALSAGNI.DAL.CYSEAIK.DPQNHVLYSN.SAAYAKKGDY.KAYEDG.KT.DLKP. | |
Retrocopy | MEQVNELKEKGDKALSAGNIYDALLCYSEAIKSDPQNHVLYSNHSAAYAKKGDYRKAYEDGYKTMDLKPN |
Parental | WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN-MEARLAGTERKFMNPFNMPNLYQKL |
WGKGY.RKAAALEFLNRFEEAK.TY..GLKHEANNPQLKEGLQ...E..LAG...KFMNPFNM.NLYQKL | |
Retrocopy | WGKGYWRKAAALEFLNRFEEAK*TYKKGLKHEANNPQLKEGLQD<LEVQLAGW--KFMNPFNMSNLYQKL |
Parental | ESDPRTRTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEVGT-PPPPPPP- |
E.DPRTRTLLADPTY.ELIEQL.NKPSDL.TKLQDP.IMTTLSVLLGVDLGSMDE.EEVGT......PP. | |
Retrocopy | ENDPRTRTLLADPTYQELIEQLGNKPSDLATKLQDPQIMTTLSVLLGVDLGSMDEVEEVGT>XXXXSPPP |
Parental | KKDTKPEPMEEDLPENKKQALKEKELGNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDY |
KKDTK.E.MEEDLPE.KKQ.LKEKEL.NEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDY | |
Retrocopy | KKDTKSELMEEDLPESKKQVLKEKELRNEAYKKKDFDTALKHYDRAKDLDPTNMTYMTNQAAVYFEKGDY |
Parental | SKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI |
SKC..LCEKAIEVG.EN.E.Y.QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI | |
Retrocopy | SKC-QLCEKAIEVGQENQEGYLQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI |
Parental | LKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN |
LKEQE..AYINPDLALEEKNKGN..F.KGDYPQA.KHYTEAIK.N | |
Retrocopy | LKEQEQPAYINPDLALEEKNKGNKYFPKGDYPQAVKHYTEAIKQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .25 RPM | 101 .39 RPM |
SRP017611_brain | 0 .40 RPM | 99 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 53 .82 RPM |
SRP017611_liver | 0 .00 RPM | 29 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015663 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000014672 | 6 retrocopies |
retro_cfam_1077, retro_cfam_1172, retro_cfam_1722, retro_cfam_1982, retro_cfam_474, retro_cfam_497 ,
|
Callithrix jacchus | ENSCJAG00000018209 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002914 | 1 retrocopy | |
Felis catus | ENSFCAG00000005937 | 1 retrocopy | |
Homo sapiens | ENSG00000168439 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012132 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016933 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012953 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004777 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003820 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021164 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014262 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010235 | 1 retrocopy |