Parental gene:

STIP1, ENSCJAG00000018209

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:119729916..119748136(+)


>ENSCJAG00000018209
ATGGAGTCCGGCAGCCCAATGGGAGAGGTGGAAATTTCCAGAACGAACAGGACCAATGGGCGCGGCCAGCGGGGCCACGA
TTGGCAAAGCAAAAAACCAATCCGTGTCGCAGAGTCCGCTCCTCCCTCCCTCCATTCGTGGAGCCTGAGATGGGTCAATG
AGCTGAAAGAGAAGGGCAACAAGGCCCTGAGTGCAGGCAACATTGATGATGCCTTACAGTGCTACTCCGAAGCCATTAAG
CTGGATCCCCACAACCACTTGCTCTACAGCAACCGTTCTGCCGCCTATGCCAAGAAAGGAGACTACCAAAAGGCTTATGA
GGATGGCTGCAAGACCGTCGACCTAAAGCCTGACTGGGGCAAGGGCTATTCACGAAAAGCAGCAGCTCTTGAGTTCTTAA
ATCGGTTTGAAGAAGCCAAGCGAACCTACGAGGAGGGCTTAAAACACGAGGCAAATAACCCTCAGCTGAAAGAGGGTTTA
CAGAATATGGAGGCCAGGTTGGCAGAGAGAAAATTCATGAACCCTTTCAACATGCCCAATCTGTATCAGAAGTTGGAGAA
TGATCCCAGGACAAGGACACTGCTCAGTGATCCCACCTACCGGGAGCTGGTAGAGCAGCTGCGAAATAAGCCTTCTGATC
TGGGCACGAAACTACAAGATCCCCGGATCATGACCACTCTCAGTGTCCTCCTTGGGGTTGATCTGGGCAGTATGGATGAG
GAGGAAGAGGTTGCAACACCTCCGCCACCACCACCTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAGAAGATCTTCC
AGAGAATAAGAAGCAGGCACTGAAAGAAAAAGAGCTGGGGAACGATGCCTACAAGAAGAAAGACTTTGACACAGCCTTGA
AGCATTACGACAAAGCAAAGGAGCTGGACCCTACCAACATGACTTACATTACCAATCAAGCAGCGGTATACTTTGAAAAG
GGTGACTACGATAAGTGTCGGGAGCTTTGTGAGAAGGCCATTGAAGTGGGGAGAGAAAACCGAGAAGACTATCGACAGAT
TGCCAAAGCTTATGCTCGAATTGGCAACTCCTACTTCAAAGAAGAAAAGTACAAGGATGCCATCCATTTCTATAACAAGT
CTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAATGCCAGCAGGCAGAGAAAATCCTGAAGGAGCAAGAGCGGCTG
GCCTACATAAACCCCGACCTGGCTTTGGAGGAGAAGAACAAAGGCAACGAGTGTTTTCAGAAAGGGGACTATCCCCAGGC
CATGAAGCATTATACAGAAGCCATCAAAAGGAACCCAAAAGATGCCAAATTATACAGTAATCGAGCTGCCTGCTATACCA
AACTTCTGGAGTTCCAGCTGGCACTTAAGGACTGTGAGGAATGTATCCAGCTGGAGCCGACCTTCATCAAGGGTTATACC
CGGAAAGCTGCTGCCCTGGAAGCGATGAAGGACTACACCAAAGCCATGGATGTGTACCAGAAGGCGCTCGACCTGGACTC
CAGCTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCATGATAGCCCCGAAGATGTGA
AGCGACGAGCCATGGCCGACCCCGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAG
AAGGACCCCCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCCAGAAGCTGATGGATGTGGGTCT
GATTGCAATTCGGTGA

Library Parental gene expression (RPM)
SRP051959_colon 40 .11 RPM
SRP051959_heart 43 .62 RPM
SRP051959_kidney 48 .83 RPM
SRP051959_liver 46 .96 RPM
SRP051959_lung 62 .66 RPM
SRP051959_lymph_node 77 .60 RPM
SRP051959_skeletal_muscle 58 .05 RPM
SRP051959_spleen 59 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015663 ortholog_one2many 2 retrogenes
retro_btau_836, retro_btau_913,
Canis familiaris ENSCAFG00000014672 ortholog_one2one 6 retrogenes
retro_cfam_1077, retro_cfam_1172, retro_cfam_1722, retro_cfam_1982, retro_cfam_474, retro_cfam_497,
Cavia porcellus ENSCPOG00000002914 ortholog_one2one 1 retrogene
retro_cpor_1443,
Felis catus ENSFCAG00000005937 ortholog_one2one 1 retrogene
retro_fcat_1510,
Homo sapiens ENSG00000168439 ortholog_one2one 1 retrogene
retro_hsap_4867,
Gorilla gorilla ENSGGOG00000012132 ortholog_one2one 1 retrogene
retro_ggor_3040,
Microcebus murinus ENSMICG00000016933 ortholog_one2one 1 retrogene
retro_mmur_1045,
Macaca mulatta ENSMMUG00000012953 ortholog_one2one 1 retrogene
retro_mmul_2607,
Nomascus leucogenys ENSNLEG00000004777 ortholog_one2one 1 retrogene
retro_nleu_2000,
Pan troglodytes ENSPTRG00000003820 ortholog_one2one 1 retrogene
retro_ptro_3242,
Rattus norvegicus ENSRNOG00000021164 ortholog_one2one 2 retrogenes
retro_rnor_2862, retro_rnor_468,
Ictidomys tridecemlineatus ENSSTOG00000014262 ortholog_one2one 1 retrogene
retro_itri_1578,
Tursiops truncatus ENSTTRG00000010235 ortholog_one2one 1 retrogene
retro_ttru_1900,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1043 79.54 88.03
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2. retro_cjac_2222 89.41 96.87
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Download FASTA sequences of all ENSCJAG00000018209 retrocopies