Parental gene:

STIP1, ENSMMUG00000012953

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:14:10225324..10246871(-)


>ENSMMUG00000012953
TTGGAGTCCGGCAGCCCAATGGGAGAGGTGGAAATTTCCAGAACGAACGGAACCAATGGGCGCGGCCAGCGCGGCTACGA
TTGGCAGAGCAAAAGACCAATCTGTGTCGCAGAAGTCCGCTCCTCCCTCCGTTCGTGCAGCCTGAGATGGGTCAATGAGC
TGAAAGAGAAAGGCAACAAGGCCCTGAGCGCGGGCAACATCGACGATGCCTTACAGTGCTACTCTGAAGCCATTAAGCTG
GATCCCCACAACCACGTGCTGTACAGCAACCGTTCTGCTGCCTATGCCAAGAAAGGAGACTACCAGAAGGCTTACGAGGA
TGGCTGCAAAACTGTCGACCTAAAGCCTGACTGGGGCAAGGGCTATTCACGAAAGGCAGCAGCTCTAGAGTTCTTAAACC
GATTTGAAGAAGCTAAGCGAACCTATGAGGAGGGCTTAAAACACGAGGCAAATAACCCTCAACTGAAAGAAGGTTTGCAG
AATATGGAGGCCAGGTTGGCAGAGAGAAAATTCATGAACCCTTTCAACATGCCCAATCTGTATCAGAAGTTGGAGAGTGA
TCCCAGGACAAGGACACTACTCAGTGATCCTACCTACCGAGAGTTGATAGAGCAGCTGCGAAACAAGCCCTCCGACCTGG
GCACGCTCCTTTCATGGAAAAGCATAGTCACCCCTCACAGGAACAACGTGGGCGGAGAGGCAGTCATCCAGGATCCAGTG
ACCCAAAGGGCGACACCTCCCCCACCACCCCCTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAGAAGATCTTCCAGA
GAATAAGAAGCAGGCACTGAAAGAAAAAGAGCTGGGGAATGATGCCTACAAGAAGAAAGACTTTGACACAGCCTTGAAGC
ATTACGACAAAGCCAAGGAGCTGGACCCCACCAACATGACTTACATTACCAATCAAGCAGCGGTGTACTTCGAAAAGGGT
GACTACAATAAGTGCCGGGAGCTTTGTGAGAAGGCCATTGACGTGGGGAGAGAAAACCGAGAAGACTATCGACAGATTGC
CAAAGCGTATGCTCGAATTGGCAACTCATACTTCAAAGAAGAAAAGTACAAGGATGCCATCCATTTCTATAACAAGTCTC
TAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAATGTCAGCAGGCAGAGAAAATCCTGAAGGAGCAAGAGCGGCTGGCC
TACATAAACCCCGACCTGGCTTTGGAGGAGAAGAACAAAGGCAACGAGTGTTTTCAGAAAGGGGACTATCCTCAGGCCAT
GAAGCATTATACAGAAGCCATCAAAAGGAACCCAAAAGATGCCAAATTATACAGCAATCGAGCTGCCTGCTACACCAAAC
TCCTGGAGTTCCAGCTGGCACTCAAGGACTGTGAGGAATGTATCCAGCTGGAGCCGACCTTCATCAAGGGTTATACACGG
AAAGCTGCTGCCCTGGAAGCGATGAAGGACTACACCAAAGCCATGGATGTGTACCAGAAGGCGCTAGACCTGGACTCCAG
CTGTAAGGAGGCGGCAGACGGCTACCAACGCTGTATGATGGCGCAGTACAACCGGCATGACAGCCCCGAAGATGTGAAGC
GACGAGCCATGGCCGACCCCGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAG
GACCCCCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCCAGAAGCTGATGGATGTGGGTCTGAT
TGCAATTCGGTGA

Library Parental gene expression (RPM)
SRP007412_brain 104 .54 RPM
SRP007412_brain_prefrontal_cortex 159 .06 RPM
SRP007412_cerebellum 119 .33 RPM
SRP007412_heart 86 .21 RPM
SRP007412_kidney 64 .67 RPM
SRP007412_liver 50 .35 RPM
SRP007412_testis 451 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015663 ortholog_one2many 2 retrogenes
retro_btau_836, retro_btau_913,
Canis familiaris ENSCAFG00000014672 ortholog_one2one 6 retrogenes
retro_cfam_1077, retro_cfam_1172, retro_cfam_1722, retro_cfam_1982, retro_cfam_474, retro_cfam_497,
Callithrix jacchus ENSCJAG00000018209 ortholog_one2one 2 retrogenes
retro_cjac_1043, retro_cjac_2222,
Cavia porcellus ENSCPOG00000002914 ortholog_one2one 1 retrogene
retro_cpor_1443,
Felis catus ENSFCAG00000005937 ortholog_one2one 1 retrogene
retro_fcat_1510,
Homo sapiens ENSG00000168439 ortholog_one2one 1 retrogene
retro_hsap_4867,
Gorilla gorilla ENSGGOG00000012132 ortholog_one2one 1 retrogene
retro_ggor_3040,
Microcebus murinus ENSMICG00000016933 ortholog_one2one 1 retrogene
retro_mmur_1045,
Nomascus leucogenys ENSNLEG00000004777 ortholog_one2one 1 retrogene
retro_nleu_2000,
Pan troglodytes ENSPTRG00000003820 ortholog_one2one 1 retrogene
retro_ptro_3242,
Rattus norvegicus ENSRNOG00000021164 ortholog_one2one 2 retrogenes
retro_rnor_2862, retro_rnor_468,
Ictidomys tridecemlineatus ENSSTOG00000014262 ortholog_one2one 1 retrogene
retro_itri_1578,
Tursiops truncatus ENSTTRG00000010235 ortholog_one2one 1 retrogene
retro_ttru_1900,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_2607 74.59 92.37
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Download FASTA sequences of all ENSMMUG00000012953 retrocopies