RetrogeneDB ID: | retro_itri_1578 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393553.1:1031903..1032860(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STIP1 | ||
Ensembl ID: | ENSSTOG00000014262 | ||
Aliases: | None | ||
Description: | stress-induced-phosphoprotein 1 [Source:HGNC Symbol;Acc:11387] |
Percent Identity: | 95.3 % |
Parental protein coverage: | 58.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRALLSDPTYRELIEQLRNKPSDLAMKLQDPRIITTLS |
G...MEARLAERKFMNPFNMPNLYQKLESDPRTRALLSDPTYRELIEQL.NKPSDLAM.LQDPRIITTLS | |
Retrocopy | GILHMEARLAERKFMNPFNMPNLYQKLESDPRTRALLSDPTYRELIEQLGNKPSDLAMTLQDPRIITTLS |
Parental | VLIGVDLGSMDEEEEAATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDSALKHYDR |
VLIGVDLGSMDEEEEAATPPPPPP.KKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDSALKHYDR | |
Retrocopy | VLIGVDLGSMDEEEEAATPPPPPPCKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDSALKHYDR |
Parental | AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEAYKDAI |
AKELDPTNMTYITNQA.VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEAYKDAI | |
Retrocopy | AKELDPTNMTYITNQAVVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEAYKDAI |
Parental | HFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN |
HFYNKSLAEH..PDV.KKCQQAEKILKEQE.L.Y.N.DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN | |
Retrocopy | HFYNKSLAEHQIPDVIKKCQQAEKILKEQEQLVYNNLDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN |
Parental | PRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK |
.RDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK | |
Retrocopy | TRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015663 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000014672 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000018209 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002914 | 1 retrocopy | |
Felis catus | ENSFCAG00000005937 | 1 retrocopy | |
Homo sapiens | ENSG00000168439 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012132 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016933 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012953 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004777 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003820 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021164 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014262 | 1 retrocopy |
retro_itri_1578 ,
|
Tursiops truncatus | ENSTTRG00000010235 | 1 retrocopy |