RetrogeneDB ID: | retro_cjac_1748 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 19:28822679..28822948(-) | ||
Located in intron of: | ENSCJAG00000018527 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007612 | ||
Aliases: | None | ||
Description: | selenoprotein K [Source:RefSeq peptide;Acc:NP_001186844] |
Percent Identity: | 80. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MVYISNGQVLDS-RNQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVK-KRRSYGNSSDSRYDDGRGPPG |
MV.ISN..VLD..R.QSPWRLSLIT.FFWGIAEF.V.FFKTLLQQDV..K.RSYGNSSDS.Y..GR.PPG | |
Retrocopy | MVSISN*LVLDT<RSQSPWRLSLITNFFWGIAEFAVSFFKTLLQQDVE<KKRSYGNSSDSPYAVGREPPG |
Parental | N-PPRRMGRINHLRGPSPPPM-AGG |
N..PRRMGRINHLRGPSPPPM.AGG | |
Retrocopy | N<LPRRMGRINHLRGPSPPPM<AGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 9 .74 RPM |
SRP051959_heart | 0 .00 RPM | 12 .40 RPM |
SRP051959_kidney | 0 .00 RPM | 14 .04 RPM |
SRP051959_liver | 0 .00 RPM | 13 .49 RPM |
SRP051959_lung | 0 .02 RPM | 9 .65 RPM |
SRP051959_lymph_node | 0 .00 RPM | 9 .31 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 21 .20 RPM |
SRP051959_spleen | 0 .00 RPM | 12 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007612 | 8 retrocopies |
retro_cjac_1748 , retro_cjac_2086, retro_cjac_2144, retro_cjac_2374, retro_cjac_2684, retro_cjac_2825, retro_cjac_3897, retro_cjac_726,
|
Cavia porcellus | ENSCPOG00000007172 | 4 retrocopies | |
Homo sapiens | ENSG00000113811 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000000681 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017513 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012622 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000019272 | 4 retrocopies | |
Mus musculus | ENSMUSG00000042682 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026533 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000002266 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000025894 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000015030 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016291 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014624 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000011459 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000506 | 2 retrocopies |