RetrogeneDB ID: | retro_cjac_272 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:54742098..54742833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023309 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000021032 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVITHFIQAGLLSALGSLILMIW |
MNIFDRKINFD.LLKFSHITPSTQQHLKKVYASFAL.MFVAAAGAYVHVITHFIQAGLLSALGSLILMIW | |
Retrocopy | MNIFDRKINFDVLLKFSHITPSTQQHLKKVYASFALYMFVAAAGAYVHVITHFIQAGLLSALGSLILMIW |
Parental | LMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAINPSILPTAFMGTAMIFTCFTLSALYAKRRSY |
LMATPHSHETEQKRLGLLAGFAFLTGV.LGPALEFCIAINPSILPTAFMGTAMIFTCFTLSALYAKRRSY | |
Retrocopy | LMATPHSHETEQKRLGLLAGFAFLTGVVLGPALEFCIAINPSILPTAFMGTAMIFTCFTLSALYAKRRSY |
Parental | LFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDQDYIWHCIDL |
LFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDQDYIWHCIDL | |
Retrocopy | LFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDQDYIWHCIDL |
Parental | FLDFITLFRKLMMILALNEKDKKKEKK |
FLDFITLFRKL.MILA.NEKDKKKEKK | |
Retrocopy | FLDFITLFRKLTMILAMNEKDKKKEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 2 .04 RPM | 123 .81 RPM |
SRP051959_heart | 0 .54 RPM | 46 .69 RPM |
SRP051959_kidney | 5 .59 RPM | 328 .24 RPM |
SRP051959_liver | 7 .95 RPM | 432 .02 RPM |
SRP051959_lung | 2 .16 RPM | 103 .31 RPM |
SRP051959_lymph_node | 1 .58 RPM | 71 .46 RPM |
SRP051959_skeletal_muscle | 1 .16 RPM | 61 .98 RPM |
SRP051959_spleen | 0 .86 RPM | 92 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018588 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008400 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021032 | 1 retrocopy |
retro_cjac_272 ,
|
Dasypus novemcinctus | ENSDNOG00000007882 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015590 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000004277 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005137 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016821 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010366 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001165 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002427 | 1 retrocopy |