RetrogeneDB ID: | retro_ogar_3470 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873869.1:276594..277099(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMBIM6 | ||
Ensembl ID: | ENSOGAG00000005137 | ||
Aliases: | None | ||
Description: | transmembrane BAX inhibitor motif containing 6 [Source:HGNC Symbol;Acc:11723] |
Percent Identity: | 82.46 % |
Parental protein coverage: | 77.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TPSTQQHLKKVYASFALCMF-VAAAGAYVHVVTHFIQAGVLSALGSLG-LMIWLMATPHTHETEQKRLGL |
TPSTQQHLKKV.ASF.LCM..V.AA.AY.HV..HFI..G.L.ALGSLG.LMIWLMATP..HETEQKRLGL | |
Retrocopy | TPSTQQHLKKVCASFVLCML<VTAAVAYGHVIIHFIPVGLLCALGSLG<LMIWLMATPRSHETEQKRLGL |
Parental | LAGFAFLTGVGLGPALELCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMFLS |
LAGF.FLTGVGLG.AL.LCIAINP.ILPTAFMGTA.IFTCF.LSALY....SYLFLGGILMSAMS.MFLS | |
Retrocopy | LAGFSFLTGVGLGSAL*LCIAINPRILPTAFMGTAVIFTCFSLSALYGQHHSYLFLGGILMSAMSQMFLS |
Parental | SLGNLFFGSIWLFQANLYVGLVVMCGFVLFD |
S.G.LFFGSIWLFQANLY.GLVVMCGFVLFD | |
Retrocopy | SMGELFFGSIWLFQANLYMGLVVMCGFVLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018588 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008400 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021032 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007882 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015590 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000004277 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005137 | 2 retrocopies |
retro_ogar_1074, retro_ogar_3470 ,
|
Pteropus vampyrus | ENSPVAG00000016821 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010366 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001165 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002427 | 1 retrocopy |