RetrogeneDB ID: | retro_meug_2157 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold96406:2397..2840(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000002641 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000015590 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.51 % |
Parental protein coverage: | 62.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TGFAFLTGVGLGPALDLCIAINPSIIPTSFLGTAMIFSCFTLSALYARRRSYLFLGGILMSAMSLMLFSS |
TGFAFLTG.GL.P.L.L.IAIN.SIIPTSFLGTAMIFSCF.LS.L.A...SYLFLG..LMS..SL.LF.S | |
Retrocopy | TGFAFLTGNGLSPVLNLWIAINLSIIPTSFLGTAMIFSCFSLSRLHAGHNSYLFLGSTLMSVTSLILFTS |
Parental | LGNLFFGSFWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDK-DYIWHCVDLFLDFVTLFRKLMMILAM |
LG.LFFGSFWLFQANLYV.LV.M..FVLF.TQ.I.EKAENGDK..YI.HCVDLFL.FVTLF.KLMMI.AM | |
Retrocopy | LGSLFFGSFWLFQANLYVRLVIMYDFVLFNTQFIVEKAENGDK<NYISHCVDLFLHFVTLFQKLMMIPAM |
Parental | NEKDKKKEK |
N..DK.KEK | |
Retrocopy | NKRDKMKEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018588 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008400 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021032 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007882 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000015590 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000004277 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005137 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016821 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010366 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001165 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002427 | 1 retrocopy |