RetrogeneDB ID: | retro_cjac_3059 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:32642870..32643230(+) | ||
Located in intron of: | ENSCJAG00000001422 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSCJAG00000016512 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 71.07 % |
Parental protein coverage: | 84.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MACASARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTAAEIQDVCSAVGLNVFLEKNKMYSR |
MACA..RS.A.QDRFICIYPAYLNNKKTI.EGR.IPISKA.EN.TA.EIQDVCSAVGLNVFLEKNKMYSR | |
Retrocopy | MACAAPRSLANQDRFICIYPAYLNNKKTITEGRQIPISKAIENSTATEIQDVCSAVGLNVFLEKNKMYSR |
Parental | EWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK |
EWN.DV..RG.V.VQL.Q..GSLCLVQFPS.....L.............QK | |
Retrocopy | EWNCDVPNRGTVWVQL*QH-GSLCLVQFPSHYTLSLTSGS*VSQCCCMQQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .69 RPM | 11 .74 RPM |
SRP051959_heart | 0 .70 RPM | 12 .19 RPM |
SRP051959_kidney | 0 .64 RPM | 13 .11 RPM |
SRP051959_liver | 0 .28 RPM | 15 .01 RPM |
SRP051959_lung | 0 .68 RPM | 15 .44 RPM |
SRP051959_lymph_node | 1 .14 RPM | 16 .87 RPM |
SRP051959_skeletal_muscle | 0 .46 RPM | 10 .59 RPM |
SRP051959_spleen | 0 .92 RPM | 16 .70 RPM |