RetrogeneDB ID: | retro_itri_831 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393330.1:1110800..1111205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSSTOG00000000348 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 69.72 % |
Parental protein coverage: | 98.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MACAASRSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFVEKNKMYSR |
MACAA..S.ADQDR.ICIY.A.L.NKK.I.EG..I..S....NPTATEIQDVCSAVGLNVFVEKNK.YSR | |
Retrocopy | MACAATHSHADQDRLICIYSA*LKNKKAIVEGSGILAS----NPTATEIQDVCSAVGLNVFVEKNKTYSR |
Parental | EWNRDVQYRGRVRVQLRQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGGDPSLQQGEGSKKGKG |
EWNRDVQYRGRV.V..........L...P..KSVM..AA.MIPKLKTR.QKTGG.D.SLQQGEGSKK.K. | |
Retrocopy | EWNRDVQYRGRVQVHSNRKMATTALSLPP--KSVM*-AA*MIPKLKTRPQKTGGSDLSLQQGEGSKKEKE |
Parental | KK |
K. | |
Retrocopy | KE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |