RetrogeneDB ID: | retro_cjac_3336 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:111958999..111959357(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000001398 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSCJAG00000008989 | ||
Aliases: | None | ||
Description: | calcyclin binding protein [Source:HGNC Symbol;Acc:30423] |
Percent Identity: | 89.34 % |
Parental protein coverage: | 52.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTV-LILCRKKVENTRWDYLTQVEKECKEKE |
..RSFDL.VKN.NGKSYS.IVNNLLKPI.VEGSS.KVKTDTV.LILCRKKVENTRWDYLTQVEKECKEKE | |
Retrocopy | SQRSFDLWVKNRNGKSYSVIVNNLLKPIFVEGSSRKVKTDTV<LILCRKKVENTRWDYLTQVEKECKEKE |
Parental | KP-SYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTEF |
KP.S.DTETDPSEGLMNVLKKIYEDGD.DMK.TINKAWVE.REKQAKGDTEF | |
Retrocopy | KP<SCDTETDPSEGLMNVLKKIYEDGDNDMKQTINKAWVETREKQAKGDTEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 28 .64 RPM |
SRP051959_heart | 0 .00 RPM | 31 .38 RPM |
SRP051959_kidney | 0 .00 RPM | 37 .34 RPM |
SRP051959_liver | 0 .00 RPM | 35 .46 RPM |
SRP051959_lung | 0 .02 RPM | 46 .36 RPM |
SRP051959_lymph_node | 0 .02 RPM | 70 .00 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 23 .54 RPM |
SRP051959_spleen | 0 .00 RPM | 48 .21 RPM |