RetrogeneDB ID: | retro_cpor_1276 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_63:5358753..5359090(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSCPOG00000012682 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.47 % |
Parental protein coverage: | 50.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKIKTDTVLILCRKKAENVQWEYLTQVEKECKEKE-KPS |
SFD.LVK.LNGK..SM.VNNLLKPISVE..SKKIKTD..L.....KAE...W...T.V.K..K..E.K.S | |
Retrocopy | SFDFLVKDLNGKDCSMTVNNLLKPISVEDDSKKIKTDRAL---K*KAESTRWVSWTHVGKVHKVIE<KAS |
Parental | YDAE-TDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTE |
.DAE....SEG.MN.L....E.G.D.MK.TINKA...SR.KQ.KGD.E | |
Retrocopy | CDAE<KTSSEGSMNILRESHEAGNDSMKQTINKARMTSRGKQVKGDIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .98 RPM |
SRP017611_liver | 0 .00 RPM | 36 .34 RPM |
SRP040447_lung | 1 .06 RPM | 34 .43 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 35 .18 RPM |