RetrogeneDB ID: | retro_cpor_1144 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:60524143..60524729(+) | ||
Located in intron of: | ENSCPOG00000008965 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000027552 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000022006 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.38 % |
Parental protein coverage: | 94.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GILKNKTAATSSV----VASAEEPRRS-VDEELSKKSQKWDEMNI-LATYHPADKDYGLMKIDEPSTPFH |
GILKN.TAA..SV....VA.A.EP.....DE.LSKK.Q..DEMNI.LAT..PAD.DYGLMK.D.P....H | |
Retrocopy | GILKNETAAAASVVTSAVACAKEPAGG<LDEGLSKKPQRGDEMNI<LATCPPADEDYGLMKMDKPHSRVH |
Parental | SMIGDDEDAVSDSEATEPLTPDVLAKKLAAAEGSELKYQIREQESSGEEDNDLSPEEREKKRQFEMKRKL |
...GD.E.A.SDSEA.EPL.PDVLAKKLAAA.G.E.K..IRE.ESS.EED.DLSPEERE.KRQFEMKRKL | |
Retrocopy | HRTGDEEVAISDSEAPEPLPPDVLAKKLAAAAGAEPKCRIREPESS-EEDDDLSPEERERKRQFEMKRKL |
Parental | HYNEGLNIKLARQLISKDLHDEEEDEEMSATADGEKMNIEESKQGSTTGDQRQNKSQNS |
HY.EGLNIKLARQLISK.LHDEEE.EEMSATADG.KMNIEESKQGSTTGDQRQNKSQNS | |
Retrocopy | HYSEGLNIKLARQLISKELHDEEEGEEMSATADGKKMNIEESKQGSTTGDQRQNKSQNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .93 RPM |
SRP017611_liver | 0 .00 RPM | 17 .80 RPM |
SRP040447_lung | 0 .03 RPM | 31 .30 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 39 .57 RPM |