RetrogeneDB ID:

retro_nleu_2315

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397342.1:9680492..9680963(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PPP1R2
Ensembl ID:ENSNLEG00000008371
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2315
ATGGCGGCCTCGACGGCCTCGCAACGGCCCCTCAAGGGGATCCTGAAGGACAAGACCTCTACGACGTCCTCTATGGTGGC
GTCGGCCGAACAGCCCCGTGGAAGTGTCCACGAGGAGCTGAGCAAAAAATCCCAGAAGTGGGATGAAATGAACATCCTGG
CGACATATCGTCTAGCGGACAAAGACTATGGTTTAATGAAAATAGATGAACCAAGCACTCCTTACCATATTATGATGGGT
GATGATGAAGATGCATGCAGTGATACAGAAACCACTGAAGCCATGGCACCAGATATCCTGGCTAAGAAATTAGCTGCTGC
TGAAGGCTTGCAGTATCGGGTTCAGGAACAAGAAGGCAGTGGAGAGCAGGATCGTGACCTCTCACCTGAAGAATGAGGAA
AAAAGCGACAATTTGAGATGAAAAGGACGCTTCACTACAATGAAGGACTCAATATCAAACTAGCTAGACAA

ORF - retro_nleu_2315 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.68 %
Parental protein coverage: 77.56 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAASTASHRPIKGILKNKTSTTSSMVASAEQPRGNVDEELSKKSQKWDEMNILATYHPADKDYGLMKIDE
MAASTAS.RP.KGILK.KTSTTSSMVASAEQPRG.V.EELSKKSQKWDEMNILATY..ADKDYGLMKIDE
RetrocopyMAASTASQRPLKGILKDKTSTTSSMVASAEQPRGSVHEELSKKSQKWDEMNILATYRLADKDYGLMKIDE
ParentalPSTPYHSMMGDDEDACSDTETTEAMAPDILAKKLAAAEGLEPKYRIQEQESSGEEDSDLSPEEREKKRQF
PSTPYH.MMGDDEDACSDTETTEAMAPDILAKKLAAAEGL...YR.QEQE.SGE.D.DLSPEE..KKRQF
RetrocopyPSTPYHIMMGDDEDACSDTETTEAMAPDILAKKLAAAEGLQ--YRVQEQEGSGEQDRDLSPEE*GKKRQF
ParentalEMKRKLHYNEGLNIKLARQ
EMKR.LHYNEGLNIKLARQ
RetrocopyEMKRTLHYNEGLNIKLARQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2315 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 58 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000094102 retrocopies
Canis familiaris ENSCAFG000000326481 retrocopy
Choloepus hoffmanni ENSCHOG000000132102 retrocopies
Callithrix jacchus ENSCJAG000000138762 retrocopies
Cavia porcellus ENSCPOG000000220062 retrocopies
Dasypus novemcinctus ENSDNOG000000236191 retrocopy
Equus caballus ENSECAG000000180501 retrocopy
Felis catus ENSFCAG000000247491 retrocopy
Homo sapiens ENSG000001842037 retrocopies
Gorilla gorilla ENSGGOG000000259085 retrocopies
Loxodonta africana ENSLAFG000000120101 retrocopy
Macaca mulatta ENSMMUG000000193962 retrocopies
Mustela putorius furoENSMPUG000000037532 retrocopies
Mus musculus ENSMUSG000000477148 retrocopies
Nomascus leucogenys ENSNLEG00000008371 6 retrocopies
Oryctolagus cuniculus ENSOCUG000000141232 retrocopies
Otolemur garnettii ENSOGAG000000025971 retrocopy
Procavia capensis ENSPCAG000000136141 retrocopy
Pongo abelii ENSPPYG000000144296 retrocopies
Pteropus vampyrus ENSPVAG000000116381 retrocopy
Rattus norvegicus ENSRNOG000000017332 retrocopies
Sus scrofa ENSSSCG000000118301 retrocopy
Sus scrofa ENSSSCG000000304551 retrocopy



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