RetrogeneDB ID: | retro_pcap_397 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_67369:2451..2864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R2 | ||
Ensembl ID: | ENSPCAG00000013614 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:HGNC Symbol;Acc:9288] |
Percent Identity: | 54.48 % |
Parental protein coverage: | 86.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DYGLMKIDEPSTPY-HSMIGDDEDALSDTEATETMNP-DMLAKKLSAAEGLEPKC-RVQEQESSGEEDSD |
DYGLMKIDEP...Y..S.IG.D.DALSD.EA.E...P.D...KKLS.A..........QEQESS.EEDSD | |
Retrocopy | DYGLMKIDEPTPYY<YSIIGGDKDALSDSEASEALDP<DVFTKKLSTAKAWSQRV>GIQEQESSEEEDSD |
Parental | LSPEEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLNDEDDEYEQMLEATDAERMNTEQSNQGSTTGDQ |
LS....E.......K.K..........LARQLISK.LN.E.D.....L.ATD.ERMN...SNQ.STT.DQ | |
Retrocopy | LS--SAEQDKSDSLK*KGNFISMKGRILARQLISKELNKEEDK--EVLKATDGERMNMKESNQRSTTTDQ |
Parental | LQNKS |
LQNKS | |
Retrocopy | LQNKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |