RetrogeneDB ID: | retro_dnov_1922 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_3712:144241..144796(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR3 | ||
Ensembl ID: | ENSDNOG00000000752 | ||
Aliases: | None | ||
Description: | signal sequence receptor, gamma (translocon-associated protein gamma) [Source:HGNC Symbol;Acc:11325] |
Percent Identity: | 90.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPKGGSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVST |
MAP.GGSKQQSEEDLLLQDFSR.LSA.SS.LFFGNAFIVSAI.IWLYWRI.HMDLIQSAVLYSV.TLVST | |
Retrocopy | MAPRGGSKQQSEEDLLLQDFSRDLSATSSTLFFGNAFIVSAIRIWLYWRIRHMDLIQSAVLYSVITLVST |
Parental | YLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFY |
YLV.FAYKNVKFVLKHKVAQKREDAVSKEVT.KLSEADNRKMS.KEKDER.LWKKNEVADYEATTFSIF. | |
Retrocopy | YLVTFAYKNVKFVLKHKVAQKREDAVSKEVTQKLSEADNRKMSWKEKDERVLWKKNEVADYEATTFSIFC |
Parental | NNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK |
NNTLFLVLVIVASFFILKNF.PTVNYILSISASS.L.A.LS.GSK | |
Retrocopy | NNTLFLVLVIVASFFILKNFRPTVNYILSISASSRLTARLSAGSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 111 .43 RPM |
SRP012922_cerebellum | 0 .00 RPM | 47 .15 RPM |
SRP012922_heart | 0 .00 RPM | 46 .41 RPM |
SRP012922_kidney | 0 .00 RPM | 93 .36 RPM |
SRP012922_liver | 0 .00 RPM | 86 .38 RPM |
SRP012922_lung | 0 .00 RPM | 91 .02 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 63 .70 RPM |
SRP012922_spleen | 0 .00 RPM | 97 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003125 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008870 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001517 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004643 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000005898 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000752 | 2 retrocopies |
retro_dnov_1922 , retro_dnov_632,
|
Homo sapiens | ENSG00000114850 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024038 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015478 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010589 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014233 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015560 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010578 | 1 retrocopy |