RetrogeneDB ID: | retro_mmul_383 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:80928339..80928882(+) | ||
Located in intron of: | ENSMMUG00000002904 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR3 | ||
Ensembl ID: | ENSMMUG00000016970 | ||
Aliases: | None | ||
Description: | translocon-associated protein subunit gamma [Source:RefSeq peptide;Acc:NP_001253473] |
Percent Identity: | 85.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVST |
.APKGSSKQ.S.EDLLLQDFS.NLSAKS...FF.NAF.VSAI.IWLYWRIWHMDLIQSAV..SVMTL.ST | |
Retrocopy | IAPKGSSKQSSKEDLLLQDFSGNLSAKSFVIFFRNAFVVSAIRIWLYWRIWHMDLIQSAVFHSVMTLEST |
Parental | YLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWK-KNEVADYEATTFSIF |
YLVAFAYKNVKFVLKHKVAQ.REDAV.....RKLSEADNRKMSRKEKD.RILWK.KN.VAD.EATTFSIF | |
Retrocopy | YLVAFAYKNVKFVLKHKVAQQREDAV----IRKLSEADNRKMSRKEKDVRILWK>KNDVADSEATTFSIF |
Parental | YNNTLFLVVVIVAS-FFILKNFNPTVNYILSISASSGLIALLSTGSK |
YNNTLFLV.VIVAS.FFILKNFNPT.NYILS.SASSGL.ALLSTGSK | |
Retrocopy | YNNTLFLVLVIVAS<FFILKNFNPTMNYILSLSASSGLNALLSTGSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 31 .93 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 36 .42 RPM |
SRP007412_heart | 0 .00 RPM | 52 .58 RPM |
SRP007412_kidney | 0 .47 RPM | 86 .62 RPM |
SRP007412_liver | 0 .00 RPM | 62 .11 RPM |
SRP007412_testis | 0 .08 RPM | 34 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_173 |
Pan troglodytes | retro_ptro_163 |
Gorilla gorilla | retro_ggor_255 |
Pongo abelii | retro_pabe_456 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003125 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008870 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001517 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004643 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000005898 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000752 | 2 retrocopies | |
Homo sapiens | ENSG00000114850 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024038 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015478 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016970 | 1 retrocopy |
retro_mmul_383 ,
|
Otolemur garnettii | ENSOGAG00000010589 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014233 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015560 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010578 | 1 retrocopy |