RetrogeneDB ID: retro_dnov_2649

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_94097:7189..8096(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW2
• Ensembl ID: ENSDNOG00000001663
• Aliases: None
• Description: basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]

Sequence

>retro_dnov_2649
ATGAATAAGCATCTGAAGCCAGTGCTAATAGGCCCAGTGGTTCAAAACTCAGAAAAGAGATGAAAAAGAGAAATTCAAAC
CCACAGTCTTCAGGGATACCCTCGTCCGGGCCTTAATGAAGCTGGTGATGACCTTGAAGCTATAGCCAAGTTTATGGACT
CTACAGGCTCAAGATTAGATTATCTTTGCTATACAGACACACTCTTCAATATCCTGGTGGCTGGCAGTCTGCTGGCCCCT
GGAAGAACACGCAGTGATGATGGTGACAAGACTGAGATGAGCAACCACTGTGTGTTTTCAGCAAATGAAGATCATGAAAC
CATCTGAAACTATGCTCAGGTCTTTGATAAACTCATTAGGAGACTCAAGTATTAGGAAAAGGCATTGAGGAGGAAATGGA
AAAAACTCCTCTTTCATAAGCCTTTTCTGAAACTGAGCAGACAAAATTGGCAATGCTTCTGGGGATCCTGCTGGTCAACA
GCACTATTCCTGCCAACAACCTCAGTAGTCTCCTCACTGACAACTTAGTCAAAGAAGACATCACAACCTCATTTGCTGTC
AAGCTTTTTAAAGCAGGGTGGCAGAAAAAGATGCCAACTCTGTTATCTCCTCTTAGAGAAAAGCCAATGAAGACAAGAAG
CTGCTTGAACTCTCTCCAGTTAACAGACAAAGTGTGGATCATTTTGTTAAATATTTCACTGATGAAGGTTTGAAGGAGCT
TTCTGACTTCCTCTGAGTCTAGCAAGTCCTGGGCACCAGGAAGGAACTCCAGAAGGAGTTCCAAGAGGGTTTTTCTCAAG
AATGCCTTATCAAGAAGATGGTGTTCTATGTCAAAGAAGGCATGAAGAGGAACAATCTTCCAGAAACAACAGTGATTTGA
TTTCTGTAGACCTGTATAATGAATGCT

Alignment

ORF - retro_dnov_2649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.92 %
• Parental protein coverage: 72.49 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MNKHQKPVLTG-QRFKTRKRDEKEKFEPTVFRDTLVQ-GLNEAGDDLEAVAKFLDSTGSRLDYRRYADTL
          MNKH.KPVL.G.Q.FKT.KRDEKEKF.PTVFRDTLV..GLNEAGDDLEA.AKF.DSTGSRLDY..Y.DTL
Retrocopy MNKHLKPVLIG>QWFKTQKRDEKEKFKPTVFRDTLVR<GLNEAGDDLEAIAKFMDSTGSRLDYLCYTDTL

Parental  FDILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLL
          F.ILVAGS.LAPG.TR.DDGDKT.M.NHCVFSANEDHETI.NYAQVF.KLIRR.KY.EKA.....KK.LL
Retrocopy FNILVAGSLLAPGRTRSDDGDKTEMSNHCVFSANEDHETI*NYAQVFDKLIRRLKY*EKALRRKWKK-LL

Parental  FLK-AFSETEQTKLAMLSGILLGNGTLPATILTSLFTDNLVKEGIAASFAVKLFKAW-MAEKDANSVTSS
          F.K.AFSETEQTKLAML.GILL.N.T.PA..L.SL.TDNLVKE.I..SFAVKLFKA...AEKDANSV.SS
Retrocopy FHK<AFSETEQTKLAMLLGILLVNSTIPANNLSSLLTDNLVKEDITTSFAVKLFKAG<VAEKDANSVISS

Parental  LRKANIDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEMV
          .RKAN.DK.LLEL.PVNRQSVDHF.KYFTD.GLKELSDFL.V.Q.LGTRKELQKE.QE..SQEC.IK.MV
Retrocopy *RKANEDKKLLELSPVNRQSVDHFVKYFTDEGLKELSDFL*V*QVLGTRKELQKEFQEGFSQECLIKKMV

Parental  LYVKE-EKRNDLPETAVIGLLWTCIMNA
          .YVKE..KRN.LPET.VI..L.TCIMNA
Retrocopy FYVKEGMKRNNLPETTVI*FL*TCIMNA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	61.45 RPM
SRP012922_cerebellum	0.00 RPM	11.41 RPM
SRP012922_heart	0.00 RPM	224.84 RPM
SRP012922_kidney	0.00 RPM	10.95 RPM
SRP012922_liver	0.00 RPM	9.13 RPM
SRP012922_lung	0.00 RPM	38.94 RPM
SRP012922_quadricep_muscle	0.00 RPM	261.36 RPM
SRP012922_spleen	0.00 RPM	41.55 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_2649 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001663	4 retrocopies	retro_dnov_2177, retro_dnov_2422, retro_dnov_2649 , retro_dnov_575,
Equus caballus	ENSECAG00000022038	1 retrocopy	retro_ecab_1121,
Macaca mulatta	ENSMMUG00000017045	1 retrocopy	retro_mmul_1457,
Ochotona princeps	ENSOPRG00000005256	2 retrocopies	retro_opri_665, retro_opri_9,
Pongo abelii	ENSPPYG00000017763	1 retrocopy	retro_pabe_2385,
Pteropus vampyrus	ENSPVAG00000014571	1 retrocopy	retro_pvam_481,
Ictidomys tridecemlineatus	ENSSTOG00000002506	1 retrocopy	retro_itri_1286,
Tarsius syrichta	ENSTSYG00000009806	1 retrocopy	retro_tsyr_1923,
Tursiops truncatus	ENSTTRG00000009867	1 retrocopy	retro_ttru_162,