RetrogeneDB ID: | retro_dnov_575 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | GeneScaffold_636:412786..414025(-) | ||
| Located in intron of: | ENSDNOG00000009262 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BZW2 | ||
| Ensembl ID: | ENSDNOG00000001663 | ||
| Aliases: | None | ||
| Description: | basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808] |
Retrocopy-Parental alignment summary:
>retro_dnov_575
AAGCAGCAAAAGCCAACGCTATCAGGCCAGCGTTTTAAAACTAGGAAAAGAGATGAAAAAGAGAGGTTTGACCCTACTCA
GTTTCAGGACTGTATTATTCAAGGCTTAACTGAAACTGGTACTGATTTGGAAGCAGTAGCAAAGTTTCTTGATGCTTCTG
GAGCAAAACTTGATTACCGCCGATATGCAGAAACACTCTTTGACATTTTGGTGGCCGGTGGAATGCTGGCCCCAGGTGGT
ACATTGGCAGATGACATGATGCGTACAGATGTCTGTGTGTTTGCAGCACAAGAAGACTTAGAGACCATGCAAGCATTTGC
TCAGGTTTTTAACAAGTTAATCAGGTGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTTAAAAAGCTGCTGCTGT
TCTTAAAGGGTTTTTCAGAGTCAGAAAGGAAAAAGCTGGCTATGTTGACTGGTGTATTTCTGGCTAATGGGACACTTAAT
GCATCCATTCTTAATAGCCTTTATAATGAGAATTTGGTTAAAGAAGGAGTTTCTGCAGCTTTTGCTGTAAAGCTCTTTAA
ATCATGGATAAATGAAAAAGATATCAATGCAGTAGCTGCAAGTCTTCGGAAAGTTAGCATGGATAACAGACTGATGGAAC
TTTTTCCTGCAAATAAGCAAAGTGTCGAACACTTCACAAAGTATTTTACTGAGGCAGGCTTGAAAGAGCTTTCTCAGTAT
GTTCGCAATCAGCAAACCATAGGAGCTCGTAAGGACCTCCAGAAAGAACTTCAAGAACAGATGTCACGTGGTGATCCGTT
TAAGGATATCATTTTATATGTCAAGGAGGAGATGAAAAAAAACAACATCCCAGAACCAGTTGTCATTGGAATAGTCTGGT
CAAGTGTAATGAGCACTGTGGAATGGAACAAAAAAGAGGAGCTTATAGCAGAGCAAGCCATCAAGCACTTGAAGCAATAC
AGCCCTCTACTTGCTGCCTTTACTACTCAAGGTCAGTCTGAGCTGACTCTGCTACTGAAGATTCAGGAGTATTGTTATGA
CAACATTCATTTCATGAAAGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAGCTGAAGTCCTGAGTGAAGAGCCCATTC
TGAAGTGGTATAAAGATGCACATGTTGCAAAGGGGGAAAGTATCTTCCCTGAGCAAATGAAAAAGTTTGTAGAGTGGCTC
AAAAGTGCTGAAGAAGAATCTGAGTCTGAAGCTGAAGAG
ORF - retro_dnov_575 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.9 % |
| Parental protein coverage: | 99.28 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFDIL |
| K.QKP.L.GQRFKTRKRDEKE.F.PT.F.D...QGL.E.G.DLEAVAKFLD..G..LDYRRYA.TLFDIL | |
| Retrocopy | KQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYRRYAETLFDIL |
| Parental | VAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLFLKA |
| VAG.MLAPGGT..DD...T.....CVF.A.ED.ET....AQVFNKLIR.YKYLEK.FEDE.KKLLLFLK. | |
| Retrocopy | VAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRCYKYLEKGFEDEVKKLLLFLKG |
| Parental | FSETEQTKLAMLSGILLGNGTLPATILTSLFTDNLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANI |
| FSE.E..KLAML.G..L.NGTL.A.IL.SL...NLVKEG..A.FAVKLFK.W..EKD.N.V..SLRK... | |
| Retrocopy | FSESERKKLAMLTGVFLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSM |
| Parental | DKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEMVLYVKEE |
| D.RL.ELFP.N.QSV.HF.KYFT.AGLKELS...R.QQ..G.RK.LQKELQE..S...P.K...LYVKEE | |
| Retrocopy | DNRLMELFPANKQSVEHFTKYFTEAGLKELSQYVRNQQTIGARKDLQKELQEQMSRGDPFKDIILYVKEE |
| Parental | -KRNDLPETAVIGLLWTCIMNAVXXXXXXXXXXXXXXXXXXQYAPLLAVFSSQGQSELILLQKVQEYCYD |
| ......PE..VIG..W...M..V..................QY.PLLA.F..QGQSEL.LL.K.QEYCYD | |
| Retrocopy | MXXXNIPEPVVIGIVWSSVMSTVEWNKKEELIAEQAIKHLKQYSPLLAAFTTQGQSELTLLLKIQEYCYD |
| Parental | NIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFREQMKKFVXXXXXXXXXSESEGEE |
| NIHFMKAFQKIVVLFYKA.VLSEE.ILKWYK.AHVAKG.S.F.EQMKKFV.........SESE.EE | |
| Retrocopy | NIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGESIFPEQMKKFVEWLKSAEEESESEAEE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 30 .34 RPM | 61 .45 RPM |
| SRP012922_cerebellum | 8 .39 RPM | 11 .41 RPM |
| SRP012922_heart | 3 .94 RPM | 224 .84 RPM |
| SRP012922_kidney | 16 .98 RPM | 10 .95 RPM |
| SRP012922_liver | 25 .08 RPM | 9 .13 RPM |
| SRP012922_lung | 15 .88 RPM | 38 .94 RPM |
| SRP012922_quadricep_muscle | 5 .71 RPM | 261 .36 RPM |
| SRP012922_spleen | 32 .16 RPM | 41 .55 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_575 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 9 parental genes, and 13 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
| Equus caballus | ENSECAG00000022038 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy | |
| Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
| Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
| Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy | |
| Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy | |
| Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
| Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |