RetrogeneDB ID: | retro_dnov_32 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_28689:17795..18617(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000008776 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSDNOG00000006719 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 93.38 % |
Parental protein coverage: | 72.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPH |
LLTEAPLNPKANREKMTQIMFETFN.PAMYVAIQAVLSLYASGRTTGIV.DSGDGVTH.VPIYEGYALPH | |
Retrocopy | LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH |
Parental | AIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP |
AI.RLDLAGRDLTDYLMKILTERGYSF.TTAEREIVRDIKEKLCYVALDFE.EMATAASSSSLEKSYELP | |
Retrocopy | AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP |
Parental | DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRM |
DGQVITIGNERFRCPE.LFQPSF.GM.S.GIHETT.NSIMKCD..I.KDLY...VLSGGTTMYPGIADRM | |
Retrocopy | DGQVITIGNERFRCPEALFQPSFLGMDSCGIHETTFNSIMKCDEEIYKDLYTSMVLSGGTTMYPGIADRM |
Parental | QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF |
QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE.GPSIVHRKCF | |
Retrocopy | QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 1955 .76 RPM | 520 .20 RPM |
SRP012922_cerebellum | 745 .77 RPM | 7 .01 RPM |
SRP012922_heart | 568 .01 RPM | 34 .11 RPM |
SRP012922_kidney | 594 .14 RPM | 124 .85 RPM |
SRP012922_liver | 625 .57 RPM | 30 .50 RPM |
SRP012922_lung | 1642 .09 RPM | 418 .77 RPM |
SRP012922_quadricep_muscle | 2540 .36 RPM | 101 .08 RPM |
SRP012922_spleen | 1903 .72 RPM | 1536 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy |
retro_dnov_32 ,
|
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |