RetrogeneDB ID: | retro_vpac_355 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_11589:10364..11272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000010621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.55 % |
Parental protein coverage: | 90.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | IITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA |
I.TNW.DMEKI.HHTFYN.L.VAPEEHP.LLT.A.LNPKAN.EKMTQIMF.TFN.PAMYVAIQAVLSLY. | |
Retrocopy | IVTNWEDMEKI*HHTFYNKLHVAPEEHPVLLTKALLNPKANHEKMTQIMFGTFNTPAMYVAIQAVLSLYS |
Parental | SGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL-AGRDLTDYLMKILTERGYSFVTTAEREIVRDIK |
SG.TTGI..DSGD.VTH.V.IY...A.PHAIMRLD..AG.DLTDYL.K..T.RGY.F.TTAE.EI.RDI. | |
Retrocopy | SGSTTGIMMDSGDAVTHTVSIYKV*AIPHAIMRLDR<AGQDLTDYLTKSHTKRGYRFTTTAEWEITRDIE |
Parental | EKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMES-AGIHETTYNSI |
EKLC.VA.DF..EMATA..S..LEKSYELPD.Q.IT.GNERF.CP..LFQPSF.GM....G.HETT.NSI | |
Retrocopy | EKLCRVARDFQQEMATATCSAFLEKSYELPDNQFITTGNERFCCPKVLFQPSFLGMDP<SGNHETTFNSI |
Parental | MKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPST--MKIKIIAP-PERKYSVWIGGSILASL |
.KCD....KDLYAN..LSGGTT.YP.I.D.MQKE.TALAPST..MKI......P.RKYS.WI.GSILASL | |
Retrocopy | VKCDVNVCKDLYANTMLSGGTTVYPSITDGMQKEFTALAPSTKKMKITALPS>PQRKYSMWICGSILASL |
Parental | STFQQMWISKQEYDEAGPSIVHRKCF |
STFQQMW.SKQ.Y.E.GPS..HRKCF | |
Retrocopy | STFQQMWVSKQKYNESGPSTAHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005463 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |
retro_vpac_12, retro_vpac_355 , retro_vpac_651,
|