RetrogeneDB ID: | retro_tsyr_92 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_2672:190968..192094(+) | ||
Located in intron of: | ENSTSYG00000010370 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSTSYG00000008155 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 93.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK |
MCEEE..TAL.CDNGSGLC.AGFAGDDAP.AVFPSIV.RPRHQGVMVGMGQKDSYVGDE.QSK.GILTLK | |
Retrocopy | MCEEE-TTALMCDNGSGLCMAGFAGDDAPQAVFPSIVCRPRHQGVMVGMGQKDSYVGDEVQSK*GILTLK |
Parental | YPIEHGIITNWDDMEKIWHHSLYNELRVAPEEHPTLLTEA-PLNPKANREKMTQIMFETFNVPAMYVAIQ |
YPIEHGIITNWDDMEKIWHHS.YNELRVAPEEHPTLLTEA.PLNPKANREKMTQIMFETFNVPAMYVAIQ | |
Retrocopy | YPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEA<PLNPKANREKMTQIMFETFNVPAMYVAIQ |
Parental | AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAERE |
AVLSLYASGRTTGIVLDSGDGVTHNV.IYEGYALPHAIMRLDLAGRDL.DYLMKILTE.GYSFVTTAE.E | |
Retrocopy | AVLSLYASGRTTGIVLDSGDGVTHNVLIYEGYALPHAIMRLDLAGRDLMDYLMKILTEGGYSFVTTAEQE |
Parental | IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHET |
IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC.ETLFQPSFIGMES.GIHE. | |
Retrocopy | IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCLETLFQPSFIGMESTGIHEA |
Parental | TYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA |
TYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAP..MKIKIIAPPERKYSVWIGGSIL. | |
Retrocopy | TYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPNAMKIKIIAPPERKYSVWIGGSILS |
Parental | SLSTFQQMWIS-KQEYDEAGPSIVHRKCF |
SLSTFQQMWIS...EYDEAGPS.VHRKCF | |
Retrocopy | SLSTFQQMWIS<QPEYDEAGPSSVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000000406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |